Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_N20
(633 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 29 0.56
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||... 27 3.0
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 27 3.0
SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces pomb... 26 3.9
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 26 3.9
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 3.9
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 26 5.2
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 26 5.2
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo... 25 6.9
SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr... 25 6.9
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 6.9
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 25 9.1
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi... 25 9.1
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p... 25 9.1
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 29.1 bits (62), Expect = 0.56
Identities = 27/96 (28%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
Frame = +1
Query: 232 SDVDEIKVPERYQGSATN--FQDDIAIVILTNSFTFNDHVKPVC--LSFDHRLDEKQLKE 399
S D I P +TN +L+ S+ + V +C LSF R ++Q E
Sbjct: 332 SKSDPINAPNSSSSISTNSPLAPTAYYKLLSKSWLSLEPVGQICISLSFSKRTTKRQFPE 391
Query: 400 GNFGKVGGWGLTGEDEKASQV-LKTVDLPYVDIQQC 504
G+ G ED ASQV + V + I +C
Sbjct: 392 TGLGRQGAIRQKKEDVVASQVGHQFVQRQFYQIMRC 427
>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 498
Score = 26.6 bits (56), Expect = 3.0
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +1
Query: 253 VPERYQGSATNFQDDIAIVILTNSFTFNDHVKPVC 357
VP RY+GS +D FT++ + P+C
Sbjct: 222 VPIRYKGSEELISEDFKSNTANYKFTYSIEIVPIC 256
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 26.6 bits (56), Expect = 3.0
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = -2
Query: 446 SSSPVSPHPPTFPK-LPSFNCFSS 378
S SP SPHPP+F + P + F++
Sbjct: 144 SDSPTSPHPPSFVQPHPPYGIFAA 167
>SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 351
Score = 26.2 bits (55), Expect = 3.9
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Frame = +1
Query: 421 GWGLTGE----DEKASQVLKTVDLPYVDIQQCITGSPPGFMAYI 540
G GL+GE + SQ L+ +D+PY+D ++ I G +I
Sbjct: 115 GEGLSGELGQGNRSNSQGLREIDIPYLDDKEFIIDISAGLRHWI 158
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 26.2 bits (55), Expect = 3.9
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = +1
Query: 463 LKTVDLPYVDIQQCITGSPPGFMAYITSDKICAGYTNGTAVCKGDSG-GGLVFPETIG 633
L V+LP ++ PP A T T+G V K +G GG+ P T G
Sbjct: 529 LHDVNLPASGNASSVSAIPPQVSAQTTIPAASTSATSGPVVGKQSAGYGGIYSPATHG 586
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 26.2 bits (55), Expect = 3.9
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -2
Query: 482 GKSTVLSTCDAFSSSPVSPHPPTFPKLPSFNCFSSKR 372
GKS + + P S PP+F K SF+ FS+ R
Sbjct: 17 GKSRICLDSSEDTYPPHSSSPPSFQKRLSFSDFSTTR 53
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 25.8 bits (54), Expect = 5.2
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +1
Query: 235 DVDEIKVPERYQGSATNFQDDIAIVILTNSFTFNDHVK 348
++ E +PE S T+F ++I ++L N T + K
Sbjct: 294 EIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCK 331
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 25.8 bits (54), Expect = 5.2
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = -2
Query: 563 PAQILSLVI*AMNPGGLPVMHCCIST*GKSTVLSTCDAFS---SSPVSPHPP 417
PA I L + MNP G+P + G STVLS D S ++ HPP
Sbjct: 989 PAAI-QLNVWGMNPDGIPDKTRVYGSQGNSTVLSRSDPASLVGNNITIYHPP 1039
>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 25.4 bits (53), Expect = 6.9
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +1
Query: 466 KTVDLPYVDIQQCITGSPPGFMAYITSDKICAGYTN 573
K VD+P D+ SPP +I +C GY N
Sbjct: 473 KLVDIP--DLGYYTDSSPPRGEVWIRGPAVCNGYLN 506
>SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr
2|||Manual
Length = 180
Score = 25.4 bits (53), Expect = 6.9
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +1
Query: 340 HVKPVCLSFDH--RLDEKQLKEGNFGKVGGWGLTGEDEKASQVLKTV 474
+++PV FD +LDEKQL E N + G +G E+ Q TV
Sbjct: 36 NLRPVEEKFDAVIKLDEKQLSEMNDWCIEQHGKSGLTERCRQSNLTV 82
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 25.4 bits (53), Expect = 6.9
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +1
Query: 286 FQDDIAI--VILTNSFTFND-HVKPVCLSFDHRLDEKQLKEGNFGKVGGWG 429
F + +AI +L +S+T D +KP+ L H KQ+ FG + +G
Sbjct: 163 FNNRLAIHNTLLLSSYTKLDARLKPMVLLVKHWAKRKQINSPYFGTLSSYG 213
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 25.0 bits (52), Expect = 9.1
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +2
Query: 158 LRGLQSLSGNSTGRGTTS--MTPTLRNQTSMRLKSRNGT 268
L G L TG G T + PT+ +++ K RNGT
Sbjct: 124 LAGRDVLGAAKTGSGKTLAFLIPTIEMLYALKFKPRNGT 162
>SPCC1183.04c |pet127||mitochondrial membrane protein
Pet127|Schizosaccharomyces pombe|chr 3|||Manual
Length = 524
Score = 25.0 bits (52), Expect = 9.1
Identities = 21/99 (21%), Positives = 43/99 (43%), Gaps = 1/99 (1%)
Frame = +1
Query: 220 YAQKSDVDEIKVPERYQGSATNFQDDIAIVILTNSFTFNDHVKPVCLSFDHRLDE-KQLK 396
+++ S +++ V ++ S N Q + V+ F F K +D L + +
Sbjct: 40 HSKASAFEKVNVVDKE--SIGNLQHHLDTVLPKKKFQFLRDPKTNDYKWDEYLSKILPVD 97
Query: 397 EGNFGKVGGWGLTGEDEKASQVLKTVDLPYVDIQQCITG 513
+ NFG + + EDE+ +V ++ +V +TG
Sbjct: 98 KFNFGLLSKFRPPSEDEQLQKVANSIGAEFVGSTSSLTG 136
>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 669
Score = 25.0 bits (52), Expect = 9.1
Identities = 9/42 (21%), Positives = 23/42 (54%)
Frame = +1
Query: 283 NFQDDIAIVILTNSFTFNDHVKPVCLSFDHRLDEKQLKEGNF 408
+++ + + N FN ++KPV + R+++++ +E F
Sbjct: 290 DYEPQLLPICWRNKLNFNSYIKPVA-GDEGRVEDEEFEENRF 330
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,629,071
Number of Sequences: 5004
Number of extensions: 54198
Number of successful extensions: 154
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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