Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_N20
(633 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0340 + 12691974-12692155,12692248-12692312,12692816-126928... 31 0.76
01_07_0344 - 42869465-42869502,42869597-42869771,42869923-428701... 30 1.8
08_02_0067 - 11863092-11863104,11863432-11863547,11863610-118639... 29 3.1
02_05_1314 - 35661824-35661912,35662031-35662454,35662689-356627... 29 4.1
04_01_0291 + 3848091-3848975,3849062-3849351,3858003-3858339 28 7.1
12_02_0966 - 24906361-24906958,24907084-24907250,24907403-249076... 27 9.4
07_01_0962 - 8075975-8077282 27 9.4
03_05_1064 - 30058253-30058467,30058549-30058762,30058846-300589... 27 9.4
>05_03_0340 +
12691974-12692155,12692248-12692312,12692816-12692861,
12692959-12693057,12693722-12693755,12694489-12694618,
12694795-12694855,12695495-12695591,12696843-12697022,
12697120-12697233,12697283-12697396
Length = 373
Score = 31.1 bits (67), Expect = 0.76
Identities = 14/60 (23%), Positives = 30/60 (50%)
Frame = +1
Query: 445 EKASQVLKTVDLPYVDIQQCITGSPPGFMAYITSDKICAGYTNGTAVCKGDSGGGLVFPE 624
++ S++ K +D + + + G P ++++T ICA + N + K +GG P+
Sbjct: 94 QQISRLQKLIDSGDAHVTRFLWGHPAARVSHLTCYSICAEFLNKVVISKVHAGGAKHMPK 153
>01_07_0344 -
42869465-42869502,42869597-42869771,42869923-42870117,
42870678-42870788,42870899-42871111,42871551-42871658,
42871732-42871873,42872150-42873449,42874032-42874085,
42874491-42874923
Length = 922
Score = 29.9 bits (64), Expect = 1.8
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 205 NQHDAYAQKSDVDEIKVPERYQGSATN 285
NQ +Y ++S+ +KVP+ Y G++ N
Sbjct: 348 NQRHSYMKRSEQGHVKVPQEYSGASMN 374
>08_02_0067 -
11863092-11863104,11863432-11863547,11863610-11863950,
11864978-11865331,11866055-11866150,11866812-11866980,
11867541-11867618,11867745-11867926,11868010-11868094,
11868545-11868648,11869510-11869590,11870123-11870240,
11871299-11871430,11871635-11871788,11871838-11871917
Length = 700
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/48 (37%), Positives = 20/48 (41%)
Frame = +2
Query: 104 LLYQRHTVSGTTLRNFYRLRGLQSLSGNSTGRGTTSMTPTLRNQTSMR 247
LL H G TL R G + SGN+ GTTS R T R
Sbjct: 157 LLSAYHVEDGHTLHLVVRQPGQSATSGNAGNEGTTSNPARRRGPTMTR 204
>02_05_1314 -
35661824-35661912,35662031-35662454,35662689-35662787,
35662886-35662995,35663263-35663516,35664080-35664098,
35664834-35665075,35665662-35666401
Length = 658
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = +1
Query: 418 GGWGLTGEDEKASQVLKTVDLPYVDIQQCITGSPPGFMAYITSDKICAGYTNGTAVCKGD 597
GGWGL G+ K +L+ YV+ ++ G F A SD+ Y + + D
Sbjct: 508 GGWGLLGKRSKGEVLLRLTYKAYVEDEE-DEGVKNEFAAGYVSDEDVLDYVQDSTSKQSD 566
Query: 598 SGG 606
G
Sbjct: 567 MDG 569
>04_01_0291 + 3848091-3848975,3849062-3849351,3858003-3858339
Length = 503
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -3
Query: 454 MPSHPHPLVPTLRPFQSYPLSTASR 380
+PSH PL T+R S PLS A+R
Sbjct: 407 VPSHSSPLSTTIRCLLSAPLSLAAR 431
>12_02_0966 -
24906361-24906958,24907084-24907250,24907403-24907650,
24907824-24908001,24908196-24908372,24908459-24908563,
24908633-24908770,24909757-24910836
Length = 896
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -2
Query: 443 SSPVSPHPPTFPKLP 399
SSP SP PPT P LP
Sbjct: 39 SSPTSPPPPTAPPLP 53
>07_01_0962 - 8075975-8077282
Length = 435
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = -3
Query: 463 ALAMPSHPHPLVPTLRPFQSYPLSTASRLSDGRSSGRPAS 344
AL P+ P P P L P S P+ T S DG +PA+
Sbjct: 46 ALRKPTKPPP-PPPLHPRPSLPVPTTSSDDDGDIRRKPAT 84
>03_05_1064 -
30058253-30058467,30058549-30058762,30058846-30058936,
30059361-30059617,30059702-30059902,30059975-30060065,
30060510-30060573,30060754-30061021,30061118-30061249
Length = 510
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +1
Query: 382 EKQLKEGNFGKVGGWGLTGEDEKASQVLKTVDLPYVDIQQ 501
E+Q G G GGWGL+ E + ++ DIQQ
Sbjct: 19 EQQAGSGGGGGWGGWGLSIFSEISRNAVEVAKSAIADIQQ 58
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,329,093
Number of Sequences: 37544
Number of extensions: 395192
Number of successful extensions: 1241
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1241
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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