Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_N20
         (633 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g23270.1 68416.m02933 regulator of chromosome condensation (R...    29   1.9  
At2g19330.1 68415.m02255 leucine-rich repeat family protein cont...    29   1.9  
At5g65090.1 68418.m08187 endonuclease/exonuclease/phosphatase fa...    28   4.5  
At5g41550.1 68418.m05049 disease resistance protein (TIR-NBS-LRR...    28   4.5  
At4g10160.1 68417.m01662 zinc finger (C3HC4-type RING finger) fa...    28   4.5  
At5g63810.1 68418.m08008 beta-galactosidase, putative / lactase,...    27   7.8  
At4g34170.1 68417.m04848 kelch repeat-containing F-box family pr...    27   7.8  

>At3g23270.1 68416.m02933 regulator of chromosome condensation (RCC1)
            family protein contains Pfam domain PF00415: Regulator of
            chromosome condensation (RCC1); similar to zinc finger
            protein (GI:15811367) [Arabidopsis thaliana]; similar to
            chromosome condensation regulator protein (GI:22770461)
            [Cicer arietinum]
          Length = 1045

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 497  CIST*GKSTVLSTCDAFSSSPVSPHPPTFPKLP 399
            C S+   S+  S+    S SPV+P PP+ P +P
Sbjct: 1001 CYSSNSSSSSSSSNPTASDSPVAPQPPSDPSVP 1033


>At2g19330.1 68415.m02255 leucine-rich repeat family protein
           contains leucine rich repeats, Pfam:PF00560
          Length = 380

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -2

Query: 443 SSPVSPHPPTFPKLPSFNCFSSKRWSKLRQTG 348
           SSP SP  P+ PK PSFN    +R   +  +G
Sbjct: 38  SSPSSPSSPSSPKSPSFNNNEEERLEVVNLSG 69


>At5g65090.1 68418.m08187 endonuclease/exonuclease/phosphatase
           family protein similar to inositol polyphosphate
           5-phosphatase I (GI:10444261) and II (GI:10444263)
           [Arabidopsis thaliana];  contains Pfam profile PF03372:
           Endonuclease/Exonuclease/phosphatase family
          Length = 529

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 331 FNDHVKPVCLSFDHRLDEKQLKEGNFGK 414
           F+DH +PVC  F   +D K L +G F K
Sbjct: 480 FSDH-RPVCAIFAVEVDVKSLNKGRFRK 506


>At5g41550.1 68418.m05049 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1085

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -1

Query: 105 NVAGYYRPAAYLHVGSRSLSIYTCVPR*LLEL 10
           +VAG +   A L +GSRSL I T  P+ ++ L
Sbjct: 737 SVAGSWSRLARLEIGSRSLKILTHAPQSIISL 768


>At4g10160.1 68417.m01662 zinc finger (C3HC4-type RING finger)
           family protein zinc finger protein, Arabidopsis
           thaliana, gb:L76926
          Length = 225

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +1

Query: 271 GSATNFQDDIAIVILTNSFTFNDHVKPVCLSFDHRLDEK 387
           G + + ++ + IVI   SFT ND    VCL  D++ +EK
Sbjct: 72  GLSKDIREMLPIVIYKESFTVNDTQCSVCLG-DYQAEEK 109


>At5g63810.1 68418.m08008 beta-galactosidase, putative / lactase,
           putative similar to beta-galactosidase GI:7939621 from
           [Lycopersicon esculentum]; contains Pfam profile
           PF01301: Glycosyl hydrolases family 35
          Length = 741

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 518 GLPVMHCCIST*GKSTVLSTCDAFSSSPVSPHPPTFPKL 402
           G+P M  C       TV+STC+ F     +P+ P  PK+
Sbjct: 217 GVPWM-MCQQWDAPPTVISTCNGFYCDQFTPNTPDKPKI 254


>At4g34170.1 68417.m04848 kelch repeat-containing F-box family
           protein low similarity to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 293

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
 Frame = +2

Query: 107 LYQRHTVSGTTLRNFYRLRG-----LQSLSGNSTGRGTTSMTPTL 226
           LYQ  T+ G T R FYR        +Q LS NST  G   + P +
Sbjct: 51  LYQTRTLLGRTERCFYRQYSSRKILVQILSPNSTSAGIAVVGPNI 95


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,049,725
Number of Sequences: 28952
Number of extensions: 297013
Number of successful extensions: 968
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)