Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_N18
         (533 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2045| Best HMM Match : EGF (HMM E-Value=0)                          31   0.59 
SB_36411| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_47088| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_42099| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_6365| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.2  
SB_32308| Best HMM Match : MIF4G (HMM E-Value=1.5e-17)                 27   7.3  
SB_5195| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.6  
SB_32311| Best HMM Match : SRCR (HMM E-Value=2.9e-21)                  27   9.6  
SB_1442| Best HMM Match : SRCR (HMM E-Value=0)                         27   9.6  

>SB_2045| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1101

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +3

Query: 168 SCVWGAVNYTSDCNAECKRRGYRGGHCGSFAN 263
           +CV G  NYT +C+      GY+G HCG   N
Sbjct: 719 TCVDGIANYTCNCSI-----GYKGRHCGERIN 745


>SB_36411| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 654

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 12/19 (63%), Positives = 14/19 (73%), Gaps = 2/19 (10%)
 Frame = +3

Query: 183 AVNYTSDCNA--ECKRRGY 233
           A+NY SDC A  EC +RGY
Sbjct: 187 AINYCSDCTAVQECSKRGY 205


>SB_47088| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 259

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 189 NYTSDCNAECKRRGYRGGHC 248
           NY + C  +C RR Y  G+C
Sbjct: 47  NYVNCCEGKCSRRAYCNGYC 66


>SB_42099| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 298

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 204 CNAECKRRGYRGGHCGSFANVNCWCE 281
           C A C+ RGYR  +CG  A+  C+C+
Sbjct: 34  CCARCRARGYR--YCGLQASDWCFCD 57


>SB_6365| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1017

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
 Frame = +3

Query: 150 ADKLIGSCVWGAVNYTSDCNAE-----CKRRGYRGGHCGSFANVNC 272
           A+ + GSC+ G  NYT  C+       C  R Y+  +   F  VNC
Sbjct: 704 AECVNGSCIDGVNNYTCLCSVGFKGRLCDERVYKCANDSCFPGVNC 749


>SB_32308| Best HMM Match : MIF4G (HMM E-Value=1.5e-17)
          Length = 605

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 120 IVSSPQNGALADKLIGSCVWGAVNYTSDCNAEC 218
           +V+   +  L + ++ +CVW  +N T D + EC
Sbjct: 493 LVNEGLSKILTENIMHTCVWKLINRTDDESLEC 525


>SB_5195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 542

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +2

Query: 392 IFNQYIRIGNSGFNYKLLIFFTNCELLFYFI 484
           IF+ Y  + NSGF     +F++ CELLF F+
Sbjct: 130 IFSVYTEL-NSGF-----VFYSTCELLFVFL 154


>SB_32311| Best HMM Match : SRCR (HMM E-Value=2.9e-21)
          Length = 116

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +3

Query: 189 NYTSDCNAECKRRGYRGGHCGSFANVNCWCE 281
           N T    A+C+  G+    C    +V  WCE
Sbjct: 76  NGTESSLADCRHGGWNVSSCNHTMDVGVWCE 106


>SB_1442| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 2103

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +3

Query: 189 NYTSDCNAECKRRGYRGGHCGSFANVNCWCE 281
           N T    A+C+  G+    C    +V  WCE
Sbjct: 408 NGTESSLADCRHGGWNVSSCNHTMDVGVWCE 438


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,061,572
Number of Sequences: 59808
Number of extensions: 297764
Number of successful extensions: 699
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)