Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_N18
         (533 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g17230.1 68415.m01990 phosphate-responsive 1 family protein s...    32   0.28 
At3g16895.1 68416.m02160 expressed protein                             31   0.37 
At5g15230.1 68418.m01784 gibberellin-regulated protein 4 (GASA4)...    29   2.6  
At2g35420.1 68415.m04341 zinc finger (C3HC4-type RING finger) fa...    27   5.9  
At1g30640.1 68414.m03747 protein kinase, putative contains prote...    27   5.9  

>At2g17230.1 68415.m01990 phosphate-responsive 1 family protein
           similar to phi-1 (phosphate-induced gene) [Nicotiana
           tabacum] GI:3759184; contains Pfam profile PF04674:
           Phosphate-induced protein 1 conserved region
          Length = 363

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -3

Query: 531 FFFFFYTVRFIAVTSKIK*NNNSQLVKNINNL 436
           FFFFF    F  +TS ++ NNN++    +N+L
Sbjct: 10  FFFFFTLSSFFYITSSLQNNNNNKHTATVNSL 41


>At3g16895.1 68416.m02160 expressed protein
          Length = 83

 Score = 31.5 bits (68), Expect = 0.37
 Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 13/80 (16%)
 Frame = +3

Query: 81  SSLLLFVCITFLVI-VSSPQNGALAD--KLIG----SC-VWGAVNYTSD-CNAECKRRGY 233
           S+  L  C   +++ VS P N  LA   ++ G    +C +  + +Y +D CN +C R G+
Sbjct: 3   STKTLVTCFLVIILAVSLPNNNVLASDARIEGFSFDNCNIRCSEDYWNDECNKDCLRAGF 62

Query: 234 -RGGHCGS---FANVNCWCE 281
            +GG CGS      V C C+
Sbjct: 63  QKGGQCGSPCIPCPVKCCCQ 82


>At5g15230.1 68418.m01784 gibberellin-regulated protein 4 (GASA4) /
           gibberellin-responsive protein 4 identical to SP|P46690
           Gibberellin-regulated protein 4 precursor {Arabidopsis
           thaliana}
          Length = 106

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
 Frame = +3

Query: 66  MVKNYSSLLLFVCITF-----LVIVSSPQNGALADKLIGSCVWGAVNYTSDCNAECKRRG 230
           M K+Y ++ L   I       +V+ SS  N   + K  G          S+C+  CK+  
Sbjct: 1   MAKSYGAIFLLTLIVLFMLQTMVMASSGSNVKWSQKRYGPGSLKRTQCPSECDRRCKKTQ 60

Query: 231 YRGGHCGSFANVNC 272
           Y    C +F N  C
Sbjct: 61  YHKA-CITFCNKCC 73


>At2g35420.1 68415.m04341 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 254

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 195 TSDCNAECKRRGYRGGHCGSF 257
           T+D N + KRR Y+ G C SF
Sbjct: 209 TTDANVKSKRRHYQTGSCVSF 229


>At1g30640.1 68414.m03747 protein kinase, putative contains protein
           kinase domain, Pfam:PF00069
          Length = 562

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 13/42 (30%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
 Frame = -2

Query: 493 YIED--KIKQ*FAVSKKY*QFVIKSRISDSDILIENAMDIFK 374
           YIE+  KI++     +K  + +++  ++D+D+ +E+ MDI K
Sbjct: 57  YIENHYKIQKKSLQERKERRSILEQNLADADVTVEDKMDILK 98


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,510,878
Number of Sequences: 28952
Number of extensions: 203729
Number of successful extensions: 452
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)