Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_N17
         (674 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39508| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                36   0.040
SB_37809| Best HMM Match : NADH5_C (HMM E-Value=3)                     29   2.6  
SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1)                     29   3.4  
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)               29   4.5  

>SB_39508| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 1814

 Score = 35.5 bits (78), Expect = 0.040
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -3

Query: 252  ETTYMTSVVTWMSRSCALTAFRYSMTTSMVFVWSTQTASVPRVRVQF 112
            E  Y+T+   + ++  A+  FRYS     V +W+ +  S P  RV+F
Sbjct: 1283 EIKYLTTTKYYDTQGVAVRHFRYSFVAQQVMIWTVEHLSSPCFRVEF 1329


>SB_37809| Best HMM Match : NADH5_C (HMM E-Value=3)
          Length = 1165

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
 Frame = +2

Query: 158 TNTMEVV----ILYLKAVKAQDRLIQVTTDVMYVVSIRVAVSIMVEALRRLVVARTPAKL 325
           TNT+ +V    IL+L  +     L+ +TT +  VV   +   + +  L  LVV  T   L
Sbjct: 514 TNTLPLVVITTILHLVTITTTLHLVTITTTLPLVVITTILPLVTITTLLPLVVITTILPL 573

Query: 326 IQATTAVML 352
           +  TT + L
Sbjct: 574 VVITTTLPL 582


>SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1)
          Length = 2075

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
 Frame = +1

Query: 16  DDEPLWLFKDNNE---PRAPSTGDHPVLPSIIDDIKLNPNTRYARSLSTPNKYHGGSHTI 186
           D +  W F D N+   P+ PS      LPS   D      T   R + +   +   SH +
Sbjct: 589 DKDSGWSFSDGNQQNAPKEPSQEQTSQLPSDPSDKYSVFKTAGDRQMESNENFKDWSHMV 648

Query: 187 SKSSQSTGPTHPGYN 231
              SQ+     PG++
Sbjct: 649 RLGSQAVQNMVPGFH 663


>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
          Length = 1467

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +1

Query: 55  PRAPSTGDHPVLPSIIDDIKLNPNTRYARSLSTPNKYHGGSHTISKSSQSTGPTHPGYN 231
           P +PS+G  P  PS          T  + S ++P+ Y   S + S +S S  PT P Y+
Sbjct: 442 PSSPSSGYSPASPSYSPTSPSYSPTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYS 499


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,728,226
Number of Sequences: 59808
Number of extensions: 344893
Number of successful extensions: 821
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)