Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_N17
         (674 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g05970.1 68418.m00661 transducin family protein / WD-40 repea...    29   2.1  
At1g31630.1 68414.m03884 MADS-box family protein similar to MADS...    29   2.1  
At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest ...    28   6.6  
At1g65270.3 68414.m07401 expressed protein                             27   8.7  
At1g65270.2 68414.m07400 expressed protein                             27   8.7  
At1g65270.1 68414.m07399 expressed protein                             27   8.7  
At1g43780.1 68414.m05043 serine carboxypeptidase S10 family prot...    27   8.7  

>At5g05970.1 68418.m00661 transducin family protein / WD-40 repeat
           family protein contains similarity to regulatory protein
           Nedd1; contains Pfam PF00400: WD domain, G-beta repeat
           (6 copies, 2 weak)|19804256|gb|AV785466.1|AV785466
          Length = 781

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
 Frame = +1

Query: 43  DNNEPRAPSTGDHPVLPSIIDDIKLNPN-TR----YARSLSTPNKYHGGS 177
           DNN P +P        P  ID ++L+PN TR    YA  +ST + +  G+
Sbjct: 595 DNNLPSSPLFTKGITAPGNIDSLRLSPNFTRRFSTYAERISTTSSFSDGA 644


>At1g31630.1 68414.m03884 MADS-box family protein similar to
           MADS-box protein NMH 7 GI:2827300 from [Medicago sativa]
          Length = 339

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 37  FKDNNEPRAPSTGDHPVLPSIIDDIKLNPNTRY 135
           F DN + +AP   +H +   I D++ L+PN +Y
Sbjct: 239 FSDNIQYQAPVDFNHQIQHGIYDNLSLDPNHQY 271


>At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest
            subunit (RPB205) (RPII) (RPB1) nearly identical to
            P|P18616 DNA-directed RNA polymerase II largest subunit
            (EC 2.7.7.6) {Arabidopsis thaliana}
          Length = 1840

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
 Frame = +1

Query: 55   PRAPSTGDHPVLPSII-DDIKLNPNTRYARS---LSTPNKYHGGSHTISKSSQSTGPTHP 222
            P +PS G  P  PS      K +P+  Y+ S   LS  + Y   S   S +S S  PT P
Sbjct: 1715 PTSPSYG--PTSPSYNPQSAKYSPSIAYSPSNARLSPASPYSPTSPNYSPTSPSYSPTSP 1772

Query: 223  GYN 231
             Y+
Sbjct: 1773 SYS 1775


>At1g65270.3 68414.m07401 expressed protein
          Length = 292

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 130 RYARSLSTPNKYHGGSHTISKSSQSTGPT 216
           +Y R L  P K+   SHTI KSS+    T
Sbjct: 193 QYPRQLKLPAKWSFNSHTILKSSEQAPRT 221


>At1g65270.2 68414.m07400 expressed protein
          Length = 292

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 130 RYARSLSTPNKYHGGSHTISKSSQSTGPT 216
           +Y R L  P K+   SHTI KSS+    T
Sbjct: 193 QYPRQLKLPAKWSFNSHTILKSSEQAPRT 221


>At1g65270.1 68414.m07399 expressed protein
          Length = 292

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 130 RYARSLSTPNKYHGGSHTISKSSQSTGPT 216
           +Y R L  P K+   SHTI KSS+    T
Sbjct: 193 QYPRQLKLPAKWSFNSHTILKSSEQAPRT 221


>At1g43780.1 68414.m05043 serine carboxypeptidase S10 family protein
           similar to serine carboxylase II-3 GB:CAA55478 GI:474392
           from [Hordeum vulgare]
          Length = 479

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 9/37 (24%), Positives = 17/37 (45%)
 Frame = +1

Query: 25  PLWLFKDNNEPRAPSTGDHPVLPSIIDDIKLNPNTRY 135
           P+W+F  + +   P  G   ++  + DD+  N    Y
Sbjct: 380 PVWVFSGDEDSVIPLLGSRTLVKELADDLNFNTTVPY 416


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,139,486
Number of Sequences: 28952
Number of extensions: 221366
Number of successful extensions: 536
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)