Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_N16
         (562 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     24   0.91 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   0.91 
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        21   6.4  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   6.4  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 24.2 bits (50), Expect = 0.91
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 235 DSPVEAIASWANG 197
           D  VEA+A WANG
Sbjct: 338 DKNVEALAKWANG 350


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 0.91
 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
 Frame = +3

Query: 342 KLANKVYIANGNELNDQFAVVSRDVFNSEVQNLNFGKNEEAANIINTWVEDHTNKR---I 512
           KL  K      N  ND +     +  NS   ++ F +N+E    IN    D+ + +   +
Sbjct: 125 KLDQKFIFPQENNYNDNYFYSKSNGSNSSNSDVLFKQNKEEEQTINRKNSDYLDNQEVSM 184

Query: 513 XNLVDPSSLDSSTQ 554
            N  + S  DS  +
Sbjct: 185 ENTENKSCTDSDIE 198


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +3

Query: 438 LNFGKNEEAANIINTWVEDHTNKRIXNLVDP 530
           L F +  E   I+  W++    + I  L DP
Sbjct: 59  LRFEEVSEKYGILQNWMDKFRGEEIAILYDP 89


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 115 NSPHVCLMKSSRKTQI 162
           NSPH C  K+   T+I
Sbjct: 20  NSPHTCRTKNGDYTKI 35


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,145
Number of Sequences: 438
Number of extensions: 2779
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)