Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_N15
(584 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom... 219 3e-58
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 32 0.054
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 27 2.0
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 3.5
SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr 2|||Ma... 26 3.5
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch... 25 6.2
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 25 6.2
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 25 6.2
SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase Gmh1|Schizosa... 25 8.1
>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 585
Score = 219 bits (534), Expect = 3e-58
Identities = 109/185 (58%), Positives = 136/185 (73%)
Frame = +2
Query: 29 ALLSVSDKTGLLILGKALSEMGLQLVGSGGTATALRNAGLSVLDVSDITKAPEMLGGRVK 208
ALLSV DKTGLL L KAL+ G++L+GSGGTA +R +G+ V DVS IT APE+LGGRVK
Sbjct: 3 ALLSVYDKTGLLELAKALTSKGVKLLGSGGTAKMIRESGMEVADVSSITNAPEILGGRVK 62
Query: 209 TLHPAVHAGILARLSNTDQEDMKRQNFEMISVVVCNLYPFVQTVAKSDVTVADAVENIDI 388
TLHPAVH GILAR +D++D+ Q+ E I +VVCNLYPF +T+AK +VT+ +AVE IDI
Sbjct: 63 TLHPAVHGGILARDIPSDEKDLVEQSIEKIDIVVCNLYPFRETIAKPNVTIPEAVEEIDI 122
Query: 389 GGVTLLRAAAKNHDRVTVICDPNDYDVIINEMKQSKDHQTSAETRQRLALKAFTHTSEYD 568
GGVTLLRAAAKNH RVT++ DP DY ++ K + + R ALKAF T+ YD
Sbjct: 123 GGVTLLRAAAKNHARVTILSDPADYATFTDKFLSDK---LTQDDRNTYALKAFASTASYD 179
Query: 569 LAISD 583
AI+D
Sbjct: 180 AAITD 184
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 32.3 bits (70), Expect = 0.054
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = -3
Query: 204 TRPPSISGALVISETSRTESPAFLSAVAVPPLPTS*RPISDKALPKISKPVLSDTLSNAN 25
T PP S A + TS +PA ++A ++PP+P + A+P +S P + + +
Sbjct: 209 TLPPGFSPATP-APTSAANTPATIAATSIPPVPNVPLVGATTAVPPLSIPNVLPFTAAQH 267
Query: 24 FP 19
FP
Sbjct: 268 FP 269
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 27.1 bits (57), Expect = 2.0
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = +2
Query: 359 VADAVENIDIGGVTLLRAAAKNHDRVTVICDPNDYDVIINEMKQS 493
+ DAVE + +T+LR A DR+ VI N D +I E+K S
Sbjct: 124 LVDAVEGVCSQTITVLRQAWI--DRIKVILVINKMDRLITELKLS 166
>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 780
Score = 26.2 bits (55), Expect = 3.5
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = -1
Query: 146 VLRSSAQSLCHRYQLAEDPF--QTKLCLKSASPSYLT 42
VL++S ++L HR L+ PF Q + L + S +Y T
Sbjct: 236 VLKNSERNLLHRQLLSNHPFFSQNNVSLSTNSKNYST 272
>SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 413
Score = 26.2 bits (55), Expect = 3.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 221 AVHAGILARLSNTDQEDMKRQN 286
++HAG+ RLS TD D + N
Sbjct: 272 SIHAGLRTRLSGTDYYDYEEDN 293
>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 463
Score = 25.4 bits (53), Expect = 6.2
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -3
Query: 396 TPPISIFSTASATVTSDLATV*T 328
TPP +I ST ++TVTS AT T
Sbjct: 189 TPPPTITSTKASTVTSTEATTVT 211
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 25.4 bits (53), Expect = 6.2
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 123 AVPPLPTS*RPISDKALPKISKPVLSDTLS 34
AV P+ +PIS ++L + ++SD+LS
Sbjct: 571 AVKPIKNKPKPISFESLSAVGNLIISDSLS 600
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 25.4 bits (53), Expect = 6.2
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 470 IINEMKQSKDHQTSAETRQRLALKAFTHTSEY 565
II Q +H T+AET L+ F H SEY
Sbjct: 218 IIGLAVQFHNHTTAAETNIIQNLQYFEHLSEY 249
>SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase
Gmh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 25.0 bits (52), Expect = 8.1
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +2
Query: 356 TVADAVENIDIGGVTLLRAAAKNHDRVTVICDPNDYDVII 475
T +++N IGG T L A NH+ + +P +++++
Sbjct: 53 TTVTSLDNFLIGGSTTLYTATVNHEDLN---EPKSHEIVM 89
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,171,543
Number of Sequences: 5004
Number of extensions: 38869
Number of successful extensions: 108
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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