Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_N15
(584 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0703 + 6212409-6212456,6212661-6212742,6214031-6214106,621... 167 4e-42
12_02_0117 - 13860418-13860524,13860612-13860810,13860969-138611... 30 1.2
03_02_0565 - 9484045-9484335,9484621-9484686,9484790-9484867,948... 30 1.6
01_05_0408 + 21888898-21890181,21891289-21891984,21892167-21893705 29 2.7
08_01_0280 + 2283046-2283532,2285406-2285629,2286630-2287271 28 4.8
05_03_0373 - 13194723-13195847,13196219-13196809 28 4.8
05_01_0082 - 546134-546552,546755-547102,547192-547327,547404-54... 27 8.3
03_04_0051 + 16852980-16852991,16853952-16854033,16854108-16854763 27 8.3
03_01_0336 - 2659349-2659486,2659607-2659758,2660257-2660365,266... 27 8.3
>08_01_0703 +
6212409-6212456,6212661-6212742,6214031-6214106,
6214498-6214594,6214760-6214862,6214973-6215103,
6215285-6215462,6215528-6215715,6215945-6216154,
6216231-6216578,6216660-6216786,6217304-6217455
Length = 579
Score = 167 bits (407), Expect = 4e-42
Identities = 86/188 (45%), Positives = 115/188 (61%), Gaps = 1/188 (0%)
Frame = +2
Query: 23 KLALLSVSDKTGLLILGKALSEMGLQLVGSGGTATALRNAGLSVLDVSDITKAPEMLGGR 202
K AL+S+SDKT L LG L +G ++ +GGTA++L AG++V V IT PEML GR
Sbjct: 46 KQALISLSDKTDLAYLGNGLQALGFSIISTGGTASSLEAAGVNVTKVEQITNFPEMLDGR 105
Query: 203 VKTLHPAVHAGILARLSNTDQ-EDMKRQNFEMISVVVCNLYPFVQTVAKSDVTVADAVEN 379
VKTLHP+VH GILAR + + VVV NLYPF V ++ D +EN
Sbjct: 106 VKTLHPSVHGGILARRDQEHHLKALNEHGIGTFDVVVVNLYPFYNKVTSGVISFEDGIEN 165
Query: 380 IDIGGVTLLRAAAKNHDRVTVICDPNDYDVIINEMKQSKDHQTSAETRQRLALKAFTHTS 559
IDIGG T++RAAAKNH V V+ D DY ++ ++ +D Q + R+ LA KAF H +
Sbjct: 166 IDIGGPTMIRAAAKNHKDVLVMVDHEDYPALLEYLQGKQDDQ---QFRKMLAWKAFQHVA 222
Query: 560 EYDLAISD 583
YD A+S+
Sbjct: 223 SYDSAVSE 230
>12_02_0117 -
13860418-13860524,13860612-13860810,13860969-13861148,
13861230-13861375,13862185-13862323,13863076-13863153,
13863654-13863722,13863806-13863925,13864792-13864875,
13864961-13865032,13865204-13865345,13866016-13866023
Length = 447
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +2
Query: 149 SVLDVSDITKAPEMLGGRVKTLHPAVHAGILARLSNTDQEDMKR-QNFEMISVVVCN 316
S +D+S I+ P GGRV +P A+L N + ++ R Q FE + V C+
Sbjct: 85 SYVDISSISVVPSTTGGRVYHYYPFSALSDPAKLFNDLRWNISRPQGFEAVMRVRCS 141
>03_02_0565 -
9484045-9484335,9484621-9484686,9484790-9484867,
9485005-9485157,9485271-9485356,9485445-9485551,
9485685-9485752,9485890-9485912,9487627-9487732,
9487772-9487899,9487989-9488065,9488126-9488131,
9488206-9488264
Length = 415
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = +2
Query: 107 GSGGTATALRNAGLSVLDVSDITKAPEMLGGRVKT 211
G GGTAT LR GL V +S + GGR +T
Sbjct: 368 GGGGTATELRRRGLCVAALSPAVVSLAAEGGRRRT 402
>01_05_0408 + 21888898-21890181,21891289-21891984,21892167-21893705
Length = 1172
Score = 29.1 bits (62), Expect = 2.7
Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 2/124 (1%)
Frame = +2
Query: 17 NGKLALLSVSD--KTGLLILGKALSEMGLQLVGSGGTATALRNAGLSVLDVSDITKAPEM 190
NG + LS++D K L +G+ E+G ++ + GTA L+ G+ V V I +
Sbjct: 1026 NGTV-FLSLNDLTKRHLAEIGRGFRELGFNIIATSGTAKVLQLEGIPVEPVLKIHEGRPN 1084
Query: 191 LGGRVKTLHPAVHAGILARLSNTDQEDMKRQNFEMISVVVCNLYPFVQTVAKSDVTVADA 370
+K ++ S+ D D K ++ + + P + TV + T+ DA
Sbjct: 1085 ARDMLKN----GQIQVMVITSSGDALDSK-DGLQLRRLALAYKVPIITTVDGARATI-DA 1138
Query: 371 VENI 382
++++
Sbjct: 1139 IKSL 1142
>08_01_0280 + 2283046-2283532,2285406-2285629,2286630-2287271
Length = 450
Score = 28.3 bits (60), Expect = 4.8
Identities = 20/52 (38%), Positives = 24/52 (46%)
Frame = -3
Query: 192 SISGALVISETSRTESPAFLSAVAVPPLPTS*RPISDKALPKISKPVLSDTL 37
S SGA+V ET R+E S+ PPLP I K K S + D L
Sbjct: 21 SSSGAMVRRETRRSEVGLEKSSSLPPPLPKEAVKIDKKKTKKRSDYSIEDIL 72
>05_03_0373 - 13194723-13195847,13196219-13196809
Length = 571
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +2
Query: 335 TVAKSDVTVADAVENIDIGGVTLLRAAAKNHDRVTVICDPNDYDVIINEMK 487
T+A + + VA +EN G + + A +N V C+ D+ V NE+K
Sbjct: 212 TMAGASIRVAQLLENRFPFGSCINKTAIRNPKFVDFFCENFDWAVFENELK 262
>05_01_0082 -
546134-546552,546755-547102,547192-547327,547404-547702,
548434-548500
Length = 422
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -3
Query: 219 GCKVFTRPPSISGALVISETSRTESPAFLSAVAVPPLPTS 100
G K+ + P S + TS+ S + +SA +VPP P S
Sbjct: 6 GAKISSESPCRSASSPSGGTSKYASNSSVSAASVPPTPRS 45
>03_04_0051 + 16852980-16852991,16853952-16854033,16854108-16854763
Length = 249
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -3
Query: 213 KVFTRPPSISGALVISETSRTESPAFLSAVAVPPLP 106
KV T +GAL E R E+P+ A A+ P P
Sbjct: 146 KVVTTTNHAAGALARMEGRRAEAPSMAMAAAMAPAP 181
>03_01_0336 -
2659349-2659486,2659607-2659758,2660257-2660365,
2660459-2660563,2660874-2660957,2661072-2662745
Length = 753
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -2
Query: 418 SRSPEESHTTYIYIFNSVRNSDV*FSNCLNERI 320
SRS + SH T +++FN ++ V N L++ +
Sbjct: 68 SRSVDRSHETEVHVFNDKQDKAVEIKNILHDGV 100
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,017,929
Number of Sequences: 37544
Number of extensions: 280001
Number of successful extensions: 813
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -