Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_N15
         (584 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.)             261   3e-70
SB_57127| Best HMM Match : MGS (HMM E-Value=0.25)                     120   9e-28

>SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 896

 Score =  261 bits (639), Expect = 3e-70
 Identities = 125/188 (66%), Positives = 152/188 (80%)
 Frame = +2

Query: 20  GKLALLSVSDKTGLLILGKALSEMGLQLVGSGGTATALRNAGLSVLDVSDITKAPEMLGG 199
           G LALLSVS+K GL+   K L ++G +LV SGGTA A+RNAG+ V DVS+IT APEMLGG
Sbjct: 33  GSLALLSVSNKKGLVEFAKQLHDLGFRLVASGGTANAIRNAGIPVRDVSEITGAPEMLGG 92

Query: 200 RVKTLHPAVHAGILARLSNTDQEDMKRQNFEMISVVVCNLYPFVQTVAKSDVTVADAVEN 379
           RVKTLHPAVH GILAR+S  D+ DM +Q FE I VVVCNLYPFV TVAK  V V++AVE 
Sbjct: 93  RVKTLHPAVHGGILARVSEGDKADMAKQGFEYIRVVVCNLYPFVNTVAKEGVIVSEAVEQ 152

Query: 380 IDIGGVTLLRAAAKNHDRVTVICDPNDYDVIINEMKQSKDHQTSAETRQRLALKAFTHTS 559
           IDIGGVTLLRAAAKNH+RVTV+CDP DY+ +++EM +++   T  +TR+ LALKAF+HT+
Sbjct: 153 IDIGGVTLLRAAAKNHERVTVVCDPEDYNKVLSEMTENETCDTLPDTRKTLALKAFSHTA 212

Query: 560 EYDLAISD 583
            YD+AISD
Sbjct: 213 SYDMAISD 220


>SB_57127| Best HMM Match : MGS (HMM E-Value=0.25)
          Length = 79

 Score =  120 bits (289), Expect = 9e-28
 Identities = 56/77 (72%), Positives = 64/77 (83%)
 Frame = +2

Query: 236 ILARLSNTDQEDMKRQNFEMISVVVCNLYPFVQTVAKSDVTVADAVENIDIGGVTLLRAA 415
           ILAR+S  D+ DM +Q FE I VVVCNLYPFV TVAK  V V++AVE IDIGGVTLLRAA
Sbjct: 2   ILARVSEGDKADMAKQGFEYIRVVVCNLYPFVNTVAKEGVIVSEAVEQIDIGGVTLLRAA 61

Query: 416 AKNHDRVTVICDPNDYD 466
           AKNH+RVTV+CDP DY+
Sbjct: 62  AKNHERVTVVCDPEDYN 78


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,958,534
Number of Sequences: 59808
Number of extensions: 315782
Number of successful extensions: 840
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)