Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_N15
         (584 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g35040.1 68415.m04299 AICARFT/IMPCHase bienzyme family protei...   168   3e-42
At1g64410.1 68414.m07301 hypothetical protein                          34   0.061
At1g52960.1 68414.m05990 hypothetical protein very low similarit...    34   0.061
At2g05830.2 68415.m00631 eukaryotic translation initiation facto...    29   1.7  
At2g05830.1 68415.m00630 eukaryotic translation initiation facto...    29   1.7  
At3g58130.1 68416.m06482 N-acetylglucosaminyl-phosphatidylinosit...    28   5.3  
At3g42320.1 68416.m04373 hypothetical protein various predicted ...    28   5.3  
At3g07610.1 68416.m00911 transcription factor jumonji (jmjC) dom...    27   9.2  
At3g03710.1 68416.m00375 polyribonucleotide nucleotidyltransfera...    27   9.2  

>At2g35040.1 68415.m04299 AICARFT/IMPCHase bienzyme family protein
           similar to SP|P12048 Bifunctional purine biosynthesis
           protein purH [Includes:
           Phosphoribosylaminoimidazolecarboxamide
           formyltransferase (EC 2.1.2.3) (AICAR transformylase);
           IMP cyclohydrolase (EC 3.5.4.10) (Inosinicase) (IMP
           synthetase) (ATIC)] {Bacillus subtilis}; contains Pfam
           profiles PF01808: AICARFT/IMPCHase bienzyme, PF02142:
           MGS-like domain
          Length = 596

 Score =  168 bits (408), Expect = 3e-42
 Identities = 88/193 (45%), Positives = 117/193 (60%), Gaps = 2/193 (1%)
 Frame = +2

Query: 11  ASNGKLALLSVSDKTGLLILGKALSEMGLQLVGSGGTATALRNAGLSVLDVSDITKAPEM 190
           +S  K AL+S+SDK  L  LG  L E+G  +V +GGTA+ L NAG+SV  V  +T  PEM
Sbjct: 68  SSGEKQALISLSDKRDLASLGNGLQELGYTIVSTGGTASTLENAGVSVTKVEKLTHFPEM 127

Query: 191 LGGRVKTLHPAVHAGILARLS-NTDQEDMKRQNFEMISVVVCNLYPFVQTV-AKSDVTVA 364
           L GRVKTLHP +H GILAR       E +         VVV NLYPF + V A   ++  
Sbjct: 128 LDGRVKTLHPNIHGGILARRDVEHHMEALNEHGIGTFDVVVVNLYPFYEKVTAPGGISFE 187

Query: 365 DAVENIDIGGVTLLRAAAKNHDRVTVICDPNDYDVIINEMKQSKDHQTSAETRQRLALKA 544
           D +ENIDIGG  ++RAAAKNH  V ++ D  DY  ++  +K     Q+  + R++LA KA
Sbjct: 188 DGIENIDIGGPAMIRAAAKNHKDVLIVVDSGDYQAVLEYLKGG---QSDQQFRRKLAWKA 244

Query: 545 FTHTSEYDLAISD 583
           F H + YD A+S+
Sbjct: 245 FQHVAAYDSAVSE 257


>At1g64410.1 68414.m07301 hypothetical protein
          Length = 1231

 Score = 34.3 bits (75), Expect = 0.061
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +2

Query: 401 LLRAAAKNHDRVTVICDPNDYDVIINEMKQSKDH 502
           L +   K HDRVTV  +PND D    E  + KD+
Sbjct: 576 LFKYVHKGHDRVTVTVEPNDQDTAKKEKDEVKDY 609


>At1g52960.1 68414.m05990 hypothetical protein very low similarity
           to SP|Q9UUA2 DNA repair and recombination protein pif1,
           mitochondrial precursor {Schizosaccharomyces pombe}
          Length = 996

 Score = 34.3 bits (75), Expect = 0.061
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +2

Query: 401 LLRAAAKNHDRVTVICDPNDYDVIINEMKQSKDH 502
           L +   K HDRVTV  +PND D    E  + KD+
Sbjct: 202 LFKYVHKGHDRVTVTVEPNDQDTAKKEKDEVKDY 235


>At2g05830.2 68415.m00631 eukaryotic translation initiation factor
           2B family protein / eIF-2B family protein similar to
           CIG2 [Nicotiana tabacum] GI:15216226, IDI2 [Hordeum
           vulgare subsp. vulgare] GI:12407304; weak similarity to
           SP|Q64270 Translation initiation factor eIF-2B alpha
           subunit {Rattus norvegicus}; contains Pfam profile
           PF01008: Initiation factor 2 subunit family
          Length = 326

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +2

Query: 341 AKSDVTVADAVENIDIG--GVTLLRAAAKNHDRVTVICDPN 457
           A  D+   D V N  IG  G++LLR  AKN D+++V+   N
Sbjct: 86  ASEDMLEDDVVSNKAIGNFGLSLLRQQAKNPDKLSVLTHCN 126


>At2g05830.1 68415.m00630 eukaryotic translation initiation factor
           2B family protein / eIF-2B family protein similar to
           CIG2 [Nicotiana tabacum] GI:15216226, IDI2 [Hordeum
           vulgare subsp. vulgare] GI:12407304; weak similarity to
           SP|Q64270 Translation initiation factor eIF-2B alpha
           subunit {Rattus norvegicus}; contains Pfam profile
           PF01008: Initiation factor 2 subunit family
          Length = 374

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +2

Query: 341 AKSDVTVADAVENIDIG--GVTLLRAAAKNHDRVTVICDPN 457
           A  D+   D V N  IG  G++LLR  AKN D+++V+   N
Sbjct: 134 ASEDMLEDDVVSNKAIGNFGLSLLRQQAKNPDKLSVLTHCN 174


>At3g58130.1 68416.m06482 N-acetylglucosaminyl-phosphatidylinositol
           de-N-acetylase-related similar to SP|Q9Y2B2
           N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase
           (EC 3.5.1.-) (Phosphatidylinositol-glycan biosynthesis,
           class L protein) (PIG-L) {Homo sapiens}
          Length = 257

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 216 CKVFTRPPSISGALVISETSRTESPAFLSAVAVP 115
           CK+F R  SISGA ++ +    +    L  +A P
Sbjct: 19  CKIFFRATSISGAAILDDGKTPQKKNVLFVIAHP 52


>At3g42320.1 68416.m04373 hypothetical protein various predicted
           Helicases, Arabidopsis thaliana
          Length = 541

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 401 LLRAAAKNHDRVTVICDPNDYDVIINE 481
           L +   K HDRVTV  +PN+ D    E
Sbjct: 336 LFKYVHKEHDRVTVTIEPNNQDTTKKE 362


>At3g07610.1 68416.m00911 transcription factor jumonji (jmjC)
           domain-containing protein contains Pfam domain, PF02373:
           jmjC domain
          Length = 1027

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +2

Query: 377 NIDIGGVTLLRAAAKNHDRVTVICDPNDYDVIINEMKQSKDHQTSAE 517
           +IDI    LL+AA +       +  P+ +DV  +++K  + H    E
Sbjct: 480 HIDIDSCNLLKAACREGSEDNYLYSPSVWDVQQDDLKHFQHHWVKGE 526


>At3g03710.1 68416.m00375 polyribonucleotide nucleotidyltransferase,
           putative similar to polynucleotide phosphorylase
           GB:AAC50039 [Pisum sativum], identical to putative
           polynucleotide phosphorylase GB:AAF00646 [Arabidopsis
           thaliana]
          Length = 922

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = +2

Query: 2   ADMASNGKLALLSVSDKTGLLILGKALSEMGLQLVGSGG--TATALRNAGLSVLDVSD 169
           A+MA       LS+S    L+++ K        L+GSGG    + +  +G+  +D+ D
Sbjct: 674 AEMAKCSPPPTLSLSKYAPLILIMKVHPSKVYSLIGSGGKKVKSIIEESGVEAIDMQD 731


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,615,964
Number of Sequences: 28952
Number of extensions: 212101
Number of successful extensions: 613
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)