Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_N14
(589 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces... 29 0.67
SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease |Schizosacc... 29 0.67
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 28 1.2
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce... 27 1.5
SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|c... 27 2.0
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces... 27 2.0
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac... 26 4.7
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 25 6.2
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo... 25 6.2
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces... 25 8.2
SPBC36.03c |||spermidine family transporter |Schizosaccharomyces... 25 8.2
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 25 8.2
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 25 8.2
>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 580
Score = 28.7 bits (61), Expect = 0.67
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 456 WSGIDAYLPWTVLELNGTITEVGITL 533
WSG Y+ W V L+G +T GI L
Sbjct: 469 WSGYYTYVHWIVPTLSGLLTGAGILL 494
>SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 28.7 bits (61), Expect = 0.67
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -1
Query: 232 SAAKPANGGNIANPNVPKASCRPTSPRPNEVSR-VAITHAAPNRAR 98
+AA + A P +P A+ +PT P E+S A++H + N ++
Sbjct: 78 NAATSFSTNEPAKPPIPNAATKPTFPPQTEISNPPAVSHQSKNTSQ 123
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 27.9 bits (59), Expect = 1.2
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = -2
Query: 243 PAFAPRLNQLTAGILPIPMYRRRVAGQHHRGLMKSLA*L*HMRHPTELDQPSA 85
P +P + TA PIP+ R HH GL L H H + + P++
Sbjct: 91 PQKSPPRQKHTAPATPIPVSASRHHKPHHSGLKNLLEKAMHPGHKSNANSPTS 143
>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 576
Score = 27.5 bits (58), Expect = 1.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 456 WSGIDAYLPWTVLELNGTITEVGITL 533
WSG +Y+ W V L+G T GI L
Sbjct: 465 WSGYYSYVHWIVPTLSGLATGCGILL 490
>SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 489
Score = 27.1 bits (57), Expect = 2.0
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 430 LSPRFSVHYGAASTPIYLGLFW 495
L PR+++ GA PIY+G W
Sbjct: 86 LGPRWALALGATGYPIYIGGLW 107
>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 577
Score = 27.1 bits (57), Expect = 2.0
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 456 WSGIDAYLPWTVLELNGTITEVGITL 533
WSG +Y+ W V L+G T GI L
Sbjct: 466 WSGHYSYVNWVVPALSGLATGCGILL 491
>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
complex subunit, Fip1 homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 25.8 bits (54), Expect = 4.7
Identities = 22/78 (28%), Positives = 29/78 (37%), Gaps = 1/78 (1%)
Frame = -1
Query: 340 GVDSGMWLSNN-KIKAPINMNTACRANGITKGVSGICSAAKPANGGNIANPNVPKASCRP 164
G M S N + A N NT + G G+ S A N NP+ +
Sbjct: 212 GPQEDMGYSRNFPVHASSNYNTTHTSGG------GVHSGAATPNAYVNNNPSSSRRESES 265
Query: 163 TSPRPNEVSRVAITHAAP 110
+ PN S +THA P
Sbjct: 266 PANSPNITSSAGMTHAQP 283
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 25.4 bits (53), Expect = 6.2
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -1
Query: 205 NIANPNVPKASCRPTSPRPNEVSRVAITHAAPNR 104
N+ +V KA +P P +++SR +T ++P R
Sbjct: 554 NVNKMSVRKALIKPFHPPISKISRTRLTVSSPER 587
>SPCC4G3.09c |gyp3||GTPase activating protein
Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 635
Score = 25.4 bits (53), Expect = 6.2
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = -2
Query: 507 FRSTPKQSKVDRRRCRSIVHREAXXXXXXXXXXXRNDVQRSSA 379
FR TP Q ++RRR + R + ++ + RSS+
Sbjct: 574 FRRTPSQKDIERRREKVAKKRNSSASKLEMSDSSKHHLSRSSS 616
>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 25.0 bits (52), Expect = 8.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 116 RMCYSYARDFIRPR*CWPAT 175
R+ YSYARD + P W AT
Sbjct: 371 RIAYSYARDGVLPYSEWVAT 390
>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 538
Score = 25.0 bits (52), Expect = 8.2
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 456 WSGIDAYLPWTVLELNGTITEVGI 527
WSG ++ W V L+G +T GI
Sbjct: 427 WSGYYTHVHWIVPTLSGLLTGCGI 450
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 25.0 bits (52), Expect = 8.2
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +2
Query: 344 VVVAHGDGRACYADE 388
VVVAHG+GRA + E
Sbjct: 1216 VVVAHGEGRAVFDSE 1230
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 25.0 bits (52), Expect = 8.2
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 3/23 (13%)
Frame = +3
Query: 297 ALILLFDSHMPLSTPE---WWWH 356
A++ D PL+T E WWWH
Sbjct: 1681 AILKAMDLDKPLATIEHAQWWWH 1703
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,438,636
Number of Sequences: 5004
Number of extensions: 48423
Number of successful extensions: 143
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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