Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_N14
(589 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54925| Best HMM Match : MFS_1 (HMM E-Value=4.7e-27) 31 0.92
SB_44093| Best HMM Match : Ycf9 (HMM E-Value=0.73) 30 1.2
SB_57582| Best HMM Match : efhand (HMM E-Value=3.8e-05) 29 2.8
SB_52188| Best HMM Match : MFS_1 (HMM E-Value=2.5e-16) 29 2.8
SB_19342| Best HMM Match : Keratin_B2 (HMM E-Value=0.41) 29 3.7
SB_30029| Best HMM Match : Extensin_2 (HMM E-Value=0.45) 28 4.9
SB_49770| Best HMM Match : SURF6 (HMM E-Value=0.92) 28 6.5
SB_27467| Best HMM Match : ANF_receptor (HMM E-Value=6.9e-19) 28 6.5
SB_42811| Best HMM Match : SRCR (HMM E-Value=0) 27 8.6
SB_4907| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
>SB_54925| Best HMM Match : MFS_1 (HMM E-Value=4.7e-27)
Length = 1373
Score = 30.7 bits (66), Expect = 0.92
Identities = 30/113 (26%), Positives = 45/113 (39%), Gaps = 1/113 (0%)
Frame = -1
Query: 355 CHHHSGVDSGMWLSNNKIKAPINMNTACRANGITKGVS-GICSAAKPANGGNIANPNVPK 179
CH D ++L+ N +A +++ NGI++G S GI P IA N P
Sbjct: 1114 CHPLKVGDVCIFLTPNLAQAVLSVPGVTPGNGISQGSSLGIPEQTMPQMISQIAPRNSPG 1173
Query: 178 ASCRPTSPRPNEVSRVAITHAAPNRARPAVGHMSAITLNIKYIQKVAVGSPIT 20
S +SP + +V T AA + +P + T GS T
Sbjct: 1174 MS---SSPLGVKQVQVVATQAASSPVQPVTPQVRPATPTTPVSSSAVPGSTFT 1223
>SB_44093| Best HMM Match : Ycf9 (HMM E-Value=0.73)
Length = 246
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/79 (26%), Positives = 38/79 (48%)
Frame = +3
Query: 45 FWIYFILRVIADIWPTAGLALLGAACVIATRETSLGRGDVGRQLAFGTLGLAIFPPLAGL 224
FW +L + D + +A + ++ + +I TS G+Q FG LG + L+GL
Sbjct: 138 FWTSLLLVGLGDFF-SAPVTVIMSGTIIYWEGTSA----FGKQRVFGALGFGLGSYLSGL 192
Query: 225 AAEQMPDTPFVIPFALHAV 281
A ++ + P + HA+
Sbjct: 193 AIDETSGFNYFHPSSPHAL 211
>SB_57582| Best HMM Match : efhand (HMM E-Value=3.8e-05)
Length = 520
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -1
Query: 232 SAAKPANGGNIANPNVPKASCRPTSP-RPNEVSRVAITHAAPN 107
S +P + A+P P++ RP+SP RP +R A T +P+
Sbjct: 293 SPQRPKSPNRPASPQRPRSPNRPSSPQRPRSPNRPASTSQSPS 335
>SB_52188| Best HMM Match : MFS_1 (HMM E-Value=2.5e-16)
Length = 507
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +3
Query: 153 RGDVGRQLAFGTLGLAIFPPLAGLAAEQMPDTPFVIPFALHAVF-MLIGA 299
RG Q AF L I + L A ++ D PF+ P + AVF L+GA
Sbjct: 328 RGQGSDQAAFLYLAYGIATTIGRLVAGKILDVPFLNPVYVFAVFATLVGA 377
>SB_19342| Best HMM Match : Keratin_B2 (HMM E-Value=0.41)
Length = 1093
Score = 28.7 bits (61), Expect = 3.7
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = -1
Query: 259 ITKGVSGICSAAKPANGGNIANPNVPKASCRPTSPRPNEVSRVAITHAAPNRARPA 92
+T+ CS KPA + PN+P++S P+S P S + I A ++RPA
Sbjct: 228 VTRCTDTKCS--KPA----LVTPNIPRSSDTPSS--PPATSSITIPKATDTQSRPA 275
>SB_30029| Best HMM Match : Extensin_2 (HMM E-Value=0.45)
Length = 622
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = -1
Query: 193 PNVPKASCRPTSPRPNEVSRVAITHAAPNRARPAVGHMSAITLNIKYIQKV 41
P +P S PN +SRV + H P +PAV + + +Y V
Sbjct: 404 PQLPPYMASRQSQNPNPMSRVPMQHHQPILPKPAVDMFGSPSTGPRYPSSV 454
>SB_49770| Best HMM Match : SURF6 (HMM E-Value=0.92)
Length = 270
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 449 TEKRGDSEHRGCFSAVTTYNVHRHSKHARRR 357
TE+ S R C S+ + H+H KH R+R
Sbjct: 28 TEESPKSTPRKCVSSPKKKHKHKHKKHKRKR 58
>SB_27467| Best HMM Match : ANF_receptor (HMM E-Value=6.9e-19)
Length = 922
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/64 (26%), Positives = 27/64 (42%)
Frame = -2
Query: 327 ACGYRITKSKLQST*TLHAERTVSRKAYPAFAPRLNQLTAGILPIPMYRRRVAGQHHRGL 148
AC R K KL + R +S P+F P+L + +P P Y + + +
Sbjct: 29 ACHLRKRKQKLNGGLLMGYPRALSSLFIPSFGPQLRANSPFRIPDPSYELTLHSEFRNPV 88
Query: 147 MKSL 136
+ SL
Sbjct: 89 ISSL 92
>SB_42811| Best HMM Match : SRCR (HMM E-Value=0)
Length = 854
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = -1
Query: 349 HHSGVDSGMWLSNNKIKAPINMNTACRANGITKGVSGICSAAKPANGG--NIANPNVPKA 176
H G ++G SN I+ P + + T ++G C NGG ++++ P
Sbjct: 575 HRKGKNAGAVCSNEPIEVPTTVPATPKPASPTFPLTGPCMTRPCKNGGTCSVSSGKEPDF 634
Query: 175 SCRPT 161
C+ T
Sbjct: 635 DCKCT 639
>SB_4907| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 792
Score = 27.5 bits (58), Expect = 8.6
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +2
Query: 206 PAVSWFSRGANAGYAFRDTVRSACSVH 286
PA+ WF R + + Y R +R C ++
Sbjct: 677 PAIDWFLRNSMSNYTTRSRLRDDCIIN 703
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,620,220
Number of Sequences: 59808
Number of extensions: 412745
Number of successful extensions: 1223
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1222
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -