Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_N14
(589 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g16150.3 68418.m01888 hexose transporter, putative strong sim... 30 1.00
At5g16150.2 68418.m01887 hexose transporter, putative strong sim... 30 1.00
At5g16150.1 68418.m01886 hexose transporter, putative strong sim... 30 1.00
At3g20280.2 68416.m02570 PHD finger family protein contains Pfam... 29 2.3
At3g20280.1 68416.m02569 PHD finger family protein contains Pfam... 29 2.3
At2g43210.2 68415.m05371 UBX domain-containing protein contains ... 29 3.0
At2g43210.1 68415.m05370 UBX domain-containing protein contains ... 29 3.0
At1g71840.1 68414.m08302 transducin family protein / WD-40 repea... 28 5.3
At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3) ... 27 7.0
At3g53150.1 68416.m05857 UDP-glucoronosyl/UDP-glucosyl transfera... 27 9.3
At1g72300.1 68414.m08358 leucine-rich repeat transmembrane prote... 27 9.3
>At5g16150.3 68418.m01888 hexose transporter, putative strong
similarity to hexose transporter [Arabidopsis thaliana]
GI:8347250; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 546
Score = 30.3 bits (65), Expect = 1.00
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = +3
Query: 162 VGRQLAFGTLGLAIFPPLAGLAAEQMPDTPFVIPF-ALHAVFMLIGALILLFDSHMPLST 338
VGR LA +G+ I + L ++ T +++ +F+ IG L L + +PL+
Sbjct: 202 VGRLLA--GIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICIGILAALI-AGLPLAA 258
Query: 339 PEWWWHTATGVLAMP 383
WW T GV +P
Sbjct: 259 NPLWWRTMFGVAVIP 273
>At5g16150.2 68418.m01887 hexose transporter, putative strong
similarity to hexose transporter [Arabidopsis thaliana]
GI:8347250; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 546
Score = 30.3 bits (65), Expect = 1.00
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = +3
Query: 162 VGRQLAFGTLGLAIFPPLAGLAAEQMPDTPFVIPF-ALHAVFMLIGALILLFDSHMPLST 338
VGR LA +G+ I + L ++ T +++ +F+ IG L L + +PL+
Sbjct: 202 VGRLLA--GIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICIGILAALI-AGLPLAA 258
Query: 339 PEWWWHTATGVLAMP 383
WW T GV +P
Sbjct: 259 NPLWWRTMFGVAVIP 273
>At5g16150.1 68418.m01886 hexose transporter, putative strong
similarity to hexose transporter [Arabidopsis thaliana]
GI:8347250; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 546
Score = 30.3 bits (65), Expect = 1.00
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = +3
Query: 162 VGRQLAFGTLGLAIFPPLAGLAAEQMPDTPFVIPF-ALHAVFMLIGALILLFDSHMPLST 338
VGR LA +G+ I + L ++ T +++ +F+ IG L L + +PL+
Sbjct: 202 VGRLLA--GIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICIGILAALI-AGLPLAA 258
Query: 339 PEWWWHTATGVLAMP 383
WW T GV +P
Sbjct: 259 NPLWWRTMFGVAVIP 273
>At3g20280.2 68416.m02570 PHD finger family protein contains Pfam
profile: PF00628 PHD-finger
Length = 482
Score = 29.1 bits (62), Expect = 2.3
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
Frame = -1
Query: 283 NTACRANGI-------TKGVSGICSAAKPANGGNIANPNVPKASCRPTSPRP--NEVSRV 131
N AC AN T +GI S N G I+ P P + TSP P N++
Sbjct: 198 NVACGANSPAPVSLTETPNRTGIASTISVINNGLISKPLTPVGTMSSTSPLPVVNQLPVN 257
Query: 130 AITHAAPN 107
A ++A+P+
Sbjct: 258 ATSNASPS 265
>At3g20280.1 68416.m02569 PHD finger family protein contains Pfam
profile: PF00628 PHD-finger
Length = 743
Score = 29.1 bits (62), Expect = 2.3
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
Frame = -1
Query: 283 NTACRANGI-------TKGVSGICSAAKPANGGNIANPNVPKASCRPTSPRP--NEVSRV 131
N AC AN T +GI S N G I+ P P + TSP P N++
Sbjct: 459 NVACGANSPAPVSLTETPNRTGIASTISVINNGLISKPLTPVGTMSSTSPLPVVNQLPVN 518
Query: 130 AITHAAPN 107
A ++A+P+
Sbjct: 519 ATSNASPS 526
>At2g43210.2 68415.m05371 UBX domain-containing protein contains
Pfam profile PF00789: UBX domain
Length = 531
Score = 28.7 bits (61), Expect = 3.0
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Frame = -1
Query: 289 NMNTACRANGITKGVSGICSAAKPAN--GGNIANPN--VPKASCRPTSPRPNEVSRVAIT 122
N NT + G V + S A P + GG AN + VP+ RP + N + +V +
Sbjct: 409 NNNTDPNSGGYFAYVRRVLSYANPFSYFGGGTANASSSVPERQTRPNTEVRNNLGQVGTS 468
Query: 121 HAAPNRARPAVGHMSAITLNI 59
P+ R V + T I
Sbjct: 469 FQDPSEGRSNVRNRRPTTSRI 489
>At2g43210.1 68415.m05370 UBX domain-containing protein contains
Pfam profile PF00789: UBX domain
Length = 531
Score = 28.7 bits (61), Expect = 3.0
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Frame = -1
Query: 289 NMNTACRANGITKGVSGICSAAKPAN--GGNIANPN--VPKASCRPTSPRPNEVSRVAIT 122
N NT + G V + S A P + GG AN + VP+ RP + N + +V +
Sbjct: 409 NNNTDPNSGGYFAYVRRVLSYANPFSYFGGGTANASSSVPERQTRPNTEVRNNLGQVGTS 468
Query: 121 HAAPNRARPAVGHMSAITLNI 59
P+ R V + T I
Sbjct: 469 FQDPSEGRSNVRNRRPTTSRI 489
>At1g71840.1 68414.m08302 transducin family protein / WD-40 repeat
family protein contains Pfam profile:PF00560 Leucine
Rich Repeat (4 copies); Pfam profile:PF00069 Eukaryotic
protein kinase domain; Pfam profile:PF00400 WD domain,
G-beta repeat (7 copies)
Length = 407
Score = 27.9 bits (59), Expect = 5.3
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -1
Query: 373 STPVAVCHHHSGVDSGMWLSNNKIKA 296
STP +C H GV S W+ +K A
Sbjct: 319 STPRFICEHEEGVTSLTWIGTSKYLA 344
>At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3)
family protein low similarity to Translation initiation
factor IF-3 from [subsp. Schizaphis graminum] {Buchnera
aphidicola} SP|P46243, {Salmonella typhimurium}
SP|P33321; contains Pfam profiles PF05198: Translation
initiation factor IF-3 N-terminal domain, PF00707:
Translation initiation factor IF-3 C-terminal domain
Length = 520
Score = 27.5 bits (58), Expect = 7.0
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -1
Query: 193 PNVPKASCRPTSPRPNEVSRVAITHAAPNRAR-PAVGH 83
PN P+A RP + PNE S T AP R+ PA G+
Sbjct: 476 PNPPRAPPRPQTRLPNETSNEQPT--APGRSSGPASGY 511
>At3g53150.1 68416.m05857 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 507
Score = 27.1 bits (57), Expect = 9.3
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = -3
Query: 416 CFSAVTTYNVHRHSKH 369
CFS ++++N+H HS H
Sbjct: 155 CFSLLSSHNIHLHSPH 170
>At1g72300.1 68414.m08358 leucine-rich repeat transmembrane protein
kinase, putative similar to GI:3641252 from [Malus x
domestica] (Plant Mol. Biol. 40 (6), 945-957 (1999))
Length = 1095
Score = 27.1 bits (57), Expect = 9.3
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = -1
Query: 388 FIGIASTPVAVCHHHSGVDSGMWLSNNKIKAPINMNTACRANGITKGVSG 239
F G S+PV+ H +S +D W + K+P N T+ + ++G+SG
Sbjct: 59 FSGNVSSPVSPLHWNSSIDCCSWEGISCDKSPENRVTSIILS--SRGLSG 106
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,247,363
Number of Sequences: 28952
Number of extensions: 271172
Number of successful extensions: 811
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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