Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_N13
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    27   2.3  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   3.1  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    26   4.1  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    26   4.1  
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch...    26   4.1  
SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy...    25   9.5  
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su...    25   9.5  
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ...    25   9.5  

>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 439  NYSYYEYIYRSVTLLNEISAYKNFLVCSSLRYNSNFFLKEIVKS 570
            N+ Y +YI+R+ T+L +I   + FL   +  +NS        KS
Sbjct: 1385 NFRYVQYIHRTGTVLVQIDDDQRFLWLPNRLHNSKVSKLSFTKS 1428


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +3

Query: 36   RETARKFVHLVNYTHTDLPRNVRQGLTLVTKHMSFAADSLLKTV 167
            ++T  KFV + N+ HTDL   +   +T     +SF    L++ +
Sbjct: 916  KKTGHKFVRINNHEHTDLQEYIGTYVTDDNGSLSFREGVLVEAL 959


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
            subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 243  TSKTY-LEHLAIFLAGNEEREKIAPRSAYEQRDDLSIING 359
            T +T+ +E++A +LA   ER  +AP       DDL  + G
Sbjct: 963  TIRTFVIENIAKYLASVRERRDLAPMLEEPDMDDLDDMEG 1002


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1323

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 52   NSCISSTTPTRTCLETYAKA*RLLPSTCLL 141
            NSC S+T+ TR C + Y+   R+  + C L
Sbjct: 1241 NSCNSTTSNTRICEKCYSLVPRMSCTFCCL 1270


>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 474

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 278 PRGKRRT*EDSTAVSV*TTRRPVDYKWTQLNYLHDTNYSYIL*LY 412
           P+GK    E S    +   + PVDY+ +  NYL D + + +L +Y
Sbjct: 31  PKGKAAAEEMSKYHDISAVKFPVDYEKSIGNYLVDLDGNVLLDVY 75


>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 581

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
 Frame = +3

Query: 45  ARKFVHLVNYTHTDL-PRNVRQGLTLVTK--HMSFAADSLLKTVPVETAMVEIKG 200
           A  F+HL+ + H D+ P NV     L+T+  ++      L  ++PV ++MV+++G
Sbjct: 404 ALNFIHLLEFVHLDVKPSNV-----LITRDGNLKLGDFGLATSLPV-SSMVDLEG 452


>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
           subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = -1

Query: 610 FRLLNRR*SHIGNNFLLFLLKRNYCYTSTNYKPKSFYMLRFRSTAL 473
           FR   +R + + +NF+  L  RNY Y ST ++    +++   S+ +
Sbjct: 173 FRNFRKRLTGLLSNFVSQLSIRNYLYNSTVFEDIMSWVVAMSSSTM 218


>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
           Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 879

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -2

Query: 330 VHTLTAVLSSHVLRFPRGKWRGVQDRSWMWIVTAVIE 220
           +H +    S   L F +GKWR  +D   +W++   +E
Sbjct: 489 LHAVQGYYSFPYLTFSKGKWR--KDGDSLWVLAYNVE 523


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,459,068
Number of Sequences: 5004
Number of extensions: 47908
Number of successful extensions: 168
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)