Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_N13
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0152 - 15168285-15168733,15168813-15170712,15171653-15171757     29   4.2  
02_02_0099 + 6768115-6768285,6769950-6770034,6770501-6770628,677...    29   4.2  
10_08_0838 - 20927020-20927207,20927288-20927491,20927654-209282...    28   7.4  
10_01_0126 + 1511963-1512052,1513440-1513785,1513884-1515010           28   7.4  
09_06_0280 + 22010270-22011407,22011890-22013097                       28   7.4  
12_02_0246 - 16393943-16394410                                         27   9.8  

>09_04_0152 - 15168285-15168733,15168813-15170712,15171653-15171757
          Length = 817

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 21/93 (22%), Positives = 35/93 (37%)
 Frame = +3

Query: 45  ARKFVHLVNYTHTDLPRNVRQGLTLVTKHMSFAADSLLKTVPVETAMVEIKGWKEKXXXX 224
           AR+FV++  ++       VR    +V          LL+    E   V +  W++K    
Sbjct: 225 ARRFVYVAGWSVNADITLVRDASRMVPGAEGVTLGELLRRKADEGVAVLVMPWQDKTSVS 284

Query: 225 XXXXXSTSKTYLEHLAIFLAGNEEREKIAPRSA 323
                   +T+ E    F  G   R  + PR+A
Sbjct: 285 FLGNGGLMRTHDEETRRFFEGTNVRCFLCPRNA 317


>02_02_0099 +
           6768115-6768285,6769950-6770034,6770501-6770628,
           6771429-6771465,6773108-6774193,6774337-6774447,
           6774701-6774817,6774818-6775120,6776092-6776513,
           6776645-6777274
          Length = 1029

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/42 (42%), Positives = 21/42 (50%)
 Frame = -3

Query: 149 VGCKRHVLGNKRQALAYVSRQVRVGVVDEMHEFPRGFPGQQH 24
           VG   HVLG   Q  A     +R+ V+DE  E  RGF  Q H
Sbjct: 782 VGTPCHVLG-MLQGRALCPDHIRMFVLDEADEVLRGFKDQIH 822


>10_08_0838 - 20927020-20927207,20927288-20927491,20927654-20928297,
            20928549-20928788,20928884-20928978,20929087-20929434,
            20929824-20930042,20930422-20930487,20931191-20931362,
            20931456-20931703,20931933-20932073,20932238-20932330,
            20932421-20932471,20933571-20933693,20933793-20934035,
            20934131-20934211,20935245-20935340,20935535-20936320,
            20936443-20937012,20937322-20937427,20938102-20938206,
            20938311-20938432,20939321-20939413,20940081-20940104
          Length = 1685

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +2

Query: 122  YQAHVFCSRLSSQDGTRGNCYGRDQRLEGKTPNSITAVTIHIQ 250
            Y   +  S +S Q G  GNC  +     G T +S+ +   H+Q
Sbjct: 1402 YLLLLVASEVSLQSGDHGNCIAQATEALGVTSSSVDSFFAHLQ 1444


>10_01_0126 + 1511963-1512052,1513440-1513785,1513884-1515010
          Length = 520

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -3

Query: 188 DHSSFHGYRLEKRVGCKRHVLGNKRQALAYVSRQ-VRVGVVDEMHEFP 48
           DH S HG++  K  GC+  ++G + + +  V+ + +    + E HE P
Sbjct: 67  DHHSKHGHKKRKHSGCE--IVGEETRKVCNVTMEHLEKSSLSEEHEAP 112


>09_06_0280 + 22010270-22011407,22011890-22013097
          Length = 781

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 10  SRSWSCC*PGKPRGNSCISSTTPTRTCLETY 102
           + +WSC  PG+ R ++CIS+ +      + Y
Sbjct: 279 ANNWSCPTPGEARRSACISNNSYCHNVTDNY 309


>12_02_0246 - 16393943-16394410
          Length = 155

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 158 QDGTRGNCYGRDQRLEGKTPNSITAVTIHIQD 253
           QDG   N   +  RL+G TP S+ A  + + D
Sbjct: 23  QDGLAPNGVHQGHRLDGSTPESLHAAGVRVGD 54


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,069,454
Number of Sequences: 37544
Number of extensions: 291750
Number of successful extensions: 819
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)