Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_N13
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16808| Best HMM Match : DUF1454 (HMM E-Value=1.7)                   29   2.5  
SB_32051| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_32685| Best HMM Match : RCSD (HMM E-Value=0.18)                     29   4.3  
SB_40775| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_29994| Best HMM Match : Ank (HMM E-Value=0)                         28   5.7  
SB_19346| Best HMM Match : ATP-synt_E_2 (HMM E-Value=2.4)              28   5.7  
SB_5534| Best HMM Match : Peptidase_C48 (HMM E-Value=0.00016)          28   5.7  
SB_47849| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  

>SB_16808| Best HMM Match : DUF1454 (HMM E-Value=1.7)
          Length = 364

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
 Frame = +3

Query: 45  ARKFVHLVNYTH-----TDLPRNVRQGLTL-VTKHMSFAADSLLKTVPVETAMVEIKGWK 206
           A +F+  +NYT       D+P++   G+T      + FAA+    TVPV+  +  I  WK
Sbjct: 122 AGEFLVTINYTSGSWYSVDIPKSAFTGMTWDAVFQLKFAANGAGSTVPVDIYLDNIYFWK 181


>SB_32051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1090

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 123 TKHMS-FAADSLLKTVPVETAMVEIKGWKE 209
           TK +S F  DS LK V  E+  VE+ GW+E
Sbjct: 819 TKWLSNFVIDSYLKIVKSESTNVEVFGWEE 848


>SB_32685| Best HMM Match : RCSD (HMM E-Value=0.18)
          Length = 530

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +1

Query: 427 YMNINYSYYEYIYRSV 474
           Y+ I Y+YYEYI RS+
Sbjct: 246 YVRIRYNYYEYIIRSI 261


>SB_40775| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 712

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 136 LLQPTLFSRRYPWKLLWSRSKAGRKNSKFYYSSYNPH 246
           LL+P     RY +K  +    A  +  KFYY+   PH
Sbjct: 139 LLEPVFLKSRYCFKSSYDLVSASLRQWKFYYNVSLPH 175


>SB_29994| Best HMM Match : Ank (HMM E-Value=0)
          Length = 407

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 95  KRTPRLDACYQAHVFCSRLSSQDGTRGN 178
           KRTP  +AC Q +V C+ L    G + N
Sbjct: 260 KRTPLHEACQQGNVLCTTLLLDAGAKPN 287


>SB_19346| Best HMM Match : ATP-synt_E_2 (HMM E-Value=2.4)
          Length = 528

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 135 SFAADSLLKTVPVETAMVEIKGWKE 209
           +F  DS LK V  E+  VE+ GW+E
Sbjct: 409 NFVIDSYLKIVKSESTNVEVFGWEE 433


>SB_5534| Best HMM Match : Peptidase_C48 (HMM E-Value=0.00016)
          Length = 313

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 135 SFAADSLLKTVPVETAMVEIKGWKE 209
           +F  DS LK V  E+  VE+ GW+E
Sbjct: 126 NFVIDSYLKIVKSESTNVEVFGWEE 150


>SB_47849| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1922

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 135  SFAADSLLKTVPVETAMVEIKGWKE 209
            +F  DS LK V  E+  VE+ GW+E
Sbjct: 1674 NFVIDSYLKIVKSESTNVEVFGWEE 1698


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,101,859
Number of Sequences: 59808
Number of extensions: 364526
Number of successful extensions: 927
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)