Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_N13
         (652 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g24715.1 68416.m03103 octicosapeptide/Phox/Bem1p (PB1) domain...    30   1.5  
At5g62080.1 68418.m07791 protease inhibitor/seed storage/lipid t...    28   6.2  
At1g61750.1 68414.m06964 expressed protein contains Pfam profile...    28   6.2  

>At3g24715.1 68416.m03103 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein  contains Pfam profile
           PF00564: PB1 domain
          Length = 756

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +1

Query: 154 FSRRYPWKLLWSRSKAGRKNSKFYYSSYN--PHPRPILNTSPFSSRETKNVRR*HRGQRM 327
           F +R P ++L   + A R N  F    YN   +P P ++ SPF  R++        G   
Sbjct: 331 FCKRTPGQMLRLDATAMRPNPLFNGVQYNMASYPSPPVSPSPFQQRDSNGAYSQFHGNNS 390

Query: 328 NNET 339
           ++E+
Sbjct: 391 SSES 394


>At5g62080.1 68418.m07791 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to
           tapetum-specific protein a9 precursor {Brassica napus}
           SP|Q05772; contains Pfam protease inhibitor/seed
           storage/LTP family domain PF00234; supported by
           full-length cDNA Ceres:27795
          Length = 95

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +1

Query: 37  GKPRGNSCISSTTPTRTCLETYAKA*RLLPSTCLLQP 147
           G+P    C +  +  R CL    +A   LPS C L P
Sbjct: 52  GRPNSECCAALQSTNRDCLCNALRAATSLPSLCNLPP 88


>At1g61750.1 68414.m06964 expressed protein contains Pfam profile:
           PF01657 domain of unknown function
          Length = 352

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -1

Query: 544 NYCYTSTNYKPKSFY 500
           +YCYTS NY P S Y
Sbjct: 32  SYCYTSGNYTPNSSY 46


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,501,998
Number of Sequences: 28952
Number of extensions: 242114
Number of successful extensions: 704
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)