Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_N12
(210 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 120 2e-29
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 120 2e-29
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 25 1.0
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 1.0
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po... 25 1.4
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 25 1.8
SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c... 25 1.8
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 24 3.2
SPAC22H10.04 |||protein phosphatase type 2A|Schizosaccharomyces ... 23 4.2
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 23 4.2
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 23 4.2
SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch... 23 5.5
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz... 23 5.5
SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit Cdc1|S... 23 7.3
SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces pombe... 23 7.3
SPBC31F10.08 |mde2||Mde2 protein|Schizosaccharomyces pombe|chr 2... 23 7.3
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 22 9.6
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 22 9.6
SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 22 9.6
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos... 22 9.6
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 22 9.6
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 120 bits (290), Expect = 2e-29
Identities = 51/63 (80%), Positives = 58/63 (92%)
Frame = +3
Query: 21 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 200
M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60
Query: 201 SSE 209
+SE
Sbjct: 61 TSE 63
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 120 bits (290), Expect = 2e-29
Identities = 51/63 (80%), Positives = 58/63 (92%)
Frame = +3
Query: 21 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 200
M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60
Query: 201 SSE 209
+SE
Sbjct: 61 TSE 63
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 25.4 bits (53), Expect = 1.0
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 102 DPKIRIFDLGKKRATVDDFPLCV-HLVSDEYEQLSS 206
DPK+R+F KRAT + C LV+ + + S
Sbjct: 320 DPKLRVFPFTTKRATHSELLRCYKELVTPKISHVDS 355
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.4 bits (53), Expect = 1.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 123 DLGKKRATVDDFPLCVHLVSDEYEQL 200
++ KKRA DD + +VS EYE L
Sbjct: 1033 EIEKKRAENDDLQSKLSVVSSEYENL 1058
>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 374
Score = 25.0 bits (52), Expect = 1.4
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -2
Query: 161 WEVIHCRSLFAQVENTDLWVRHTPT 87
+ ++H +LFA EN D ++ PT
Sbjct: 343 YAILHWNTLFANEENWDSYIPQDPT 367
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 24.6 bits (51), Expect = 1.8
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = +3
Query: 78 SRFCRGVPDPKIRIFDLGKKRATVDDFP-LCVHLVSDE 188
S FC PDPK K A DD P + H+ S++
Sbjct: 84 SFFCTTTPDPKTESPSFVKYNAHCDDHPEISGHVSSND 121
>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 297
Score = 24.6 bits (51), Expect = 1.8
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = +1
Query: 127 WAKRERQWMTSH 162
W +RERQW+ H
Sbjct: 91 WLRRERQWLQRH 102
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 23.8 bits (49), Expect = 3.2
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +3
Query: 45 YRYCKNKPYPKSRFCRGVPDP-KIRIFDLGKKRATVDDFPLCVHLVSDEYE 194
Y+ N ++FC V + KI + +KRA +D LC+ +S + E
Sbjct: 34 YQKVPNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAE 84
>SPAC22H10.04 |||protein phosphatase type 2A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 307
Score = 23.4 bits (48), Expect = 4.2
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +3
Query: 117 IFDLGKKRATVDDFPLCVH 173
IFD AT+DD CVH
Sbjct: 143 IFDFLTLSATIDDTIFCVH 161
>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
Thi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 23.4 bits (48), Expect = 4.2
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 3 RFVENTMGRRPARCYRYCKNKPYP 74
RFV T GRRP+ C + PYP
Sbjct: 407 RFVSMTTGRRPSIPLE-CISIPYP 429
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 23.4 bits (48), Expect = 4.2
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -1
Query: 210 PQNSAARTHQTLSARIVGSHPLSLSFCPSRKYGSLGQA 97
P +S+ R Q+LSA + S+P S PS GSL +
Sbjct: 475 PSSSSRRRSQSLSAMLKTSNPYMPS--PSLLSGSLANS 510
>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 382
Score = 23.0 bits (47), Expect = 5.5
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -1
Query: 189 THQTLSARIVGSHPLSLSFCPSRKYGSLGQAHPD-KTEI 76
T + L I+ +H L+ + +R+ GSL PD KT++
Sbjct: 133 TPEKLPLTILLAHKLNAAMSVARRDGSLPWLRPDTKTQV 171
>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 23.0 bits (47), Expect = 5.5
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -2
Query: 50 SITSRWSAPHC 18
+I SRW PHC
Sbjct: 496 TIKSRWEIPHC 506
>SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit
Cdc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 22.6 bits (46), Expect = 7.3
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -2
Query: 125 VENTDLWVRHTPTKP 81
+ENT LW TPT P
Sbjct: 363 MENTLLWNHITPTSP 377
>SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 395
Score = 22.6 bits (46), Expect = 7.3
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +2
Query: 77 ISVLSGCA*PKDPYFRL 127
I L CA +DPYFRL
Sbjct: 229 IPCLIPCAIDQDPYFRL 245
>SPBC31F10.08 |mde2||Mde2 protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 209
Score = 22.6 bits (46), Expect = 7.3
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = +3
Query: 105 PKI--RIFDLGKKRATVDDFPLCVHLVSDEYEQLSS 206
PKI + +GK ++ FPL + +S Q SS
Sbjct: 93 PKIINDVLVIGKSDGLINSFPLSQNYISSSESQTSS 128
>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 466
Score = 22.2 bits (45), Expect = 9.6
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = +1
Query: 103 TQRSVFSTWAKRERQWMT 156
T SV+S WA + W T
Sbjct: 194 TNESVYSDWANKIWDWTT 211
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 22.2 bits (45), Expect = 9.6
Identities = 12/37 (32%), Positives = 15/37 (40%)
Frame = +3
Query: 9 VENTMGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRI 119
++N PA R KN P S F P P I +
Sbjct: 262 MQNPHNSFPASADRLQKNHPVQSSNFNPYTPAPSITV 298
>SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 22.2 bits (45), Expect = 9.6
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +3
Query: 27 RRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGK 134
R+PAR + KP+ S + +P +I ++G+
Sbjct: 86 RKPARHPQSSSQKPFASSTYNVELPTSPTKITNIGQ 121
>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 467
Score = 22.2 bits (45), Expect = 9.6
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +3
Query: 144 TVDDFPLCVHLVSDE 188
T DD+ LC+H +S +
Sbjct: 99 TEDDYILCIHRISKD 113
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 22.2 bits (45), Expect = 9.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 208 SELSCSYSSDTKCTHSGKSSTVAL 137
SELS Y+SD K ++ K + + L
Sbjct: 191 SELSKKYTSDRKIRNASKKALLEL 214
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 932,638
Number of Sequences: 5004
Number of extensions: 16410
Number of successful extensions: 55
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 49
effective length of database: 2,117,282
effective search space used: 42345640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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