Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_N12
         (210 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32519| Best HMM Match : Pkinase (HMM E-Value=7.3e-39)               26   5.4  
SB_21429| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_10968| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_18645| Best HMM Match : RVT_1 (HMM E-Value=0.0003)                  26   5.4  
SB_17913| Best HMM Match : RVP (HMM E-Value=1.1)                       26   5.4  
SB_7810| Best HMM Match : RVT_1 (HMM E-Value=2.8026e-45)               26   5.4  
SB_5450| Best HMM Match : eRF1_1 (HMM E-Value=2.6)                     26   5.4  
SB_59790| Best HMM Match : VWA (HMM E-Value=0)                         25   7.1  
SB_59387| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.1  
SB_44571| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.1  
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             25   9.4  
SB_52361| Best HMM Match : EutS (HMM E-Value=1)                        25   9.4  
SB_39849| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.4  
SB_26957| Best HMM Match : PDZ (HMM E-Value=0)                         25   9.4  
SB_21044| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 25   9.4  
SB_19342| Best HMM Match : Keratin_B2 (HMM E-Value=0.41)               25   9.4  

>SB_32519| Best HMM Match : Pkinase (HMM E-Value=7.3e-39)
          Length = 1486

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/37 (29%), Positives = 15/37 (40%)
 Frame = +3

Query: 48  RYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDF 158
           RYC     PKS  C G+   ++   D        D+F
Sbjct: 622 RYCATSAIPKSLSCLGIARRQLNFGDASLSSTEYDNF 658


>SB_21429| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 840

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -2

Query: 98  HTPTKPRFRIRFILTISITSRWSAPHCVLHK 6
           H   K +  ++F+  + I+S W   +  LHK
Sbjct: 440 HVRCKEKHGVQFVQRVQISSAWRRAYASLHK 470


>SB_10968| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 181

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -1

Query: 123 RKYGSLGQAHPDKTEI*DTVYSYNIDNISL 34
           RKY SLG++        D V++Y+++ + L
Sbjct: 116 RKYNSLGKSSAKPEPSDDVVFTYDVEELGL 145


>SB_18645| Best HMM Match : RVT_1 (HMM E-Value=0.0003)
          Length = 1205

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -2

Query: 98  HTPTKPRFRIRFILTISITSRWSAPHCVLHK 6
           H   K +  ++F+  + I+S W   +  LHK
Sbjct: 267 HVRCKEKHGVQFVQMVQISSAWRRAYASLHK 297


>SB_17913| Best HMM Match : RVP (HMM E-Value=1.1)
          Length = 458

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -2

Query: 98  HTPTKPRFRIRFILTISITSRWSAPHCVLHK 6
           H   K +  ++F+  + I+S W   +  LHK
Sbjct: 354 HVRCKEKHGVQFVQRVQISSAWRRAYASLHK 384


>SB_7810| Best HMM Match : RVT_1 (HMM E-Value=2.8026e-45)
          Length = 732

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -2

Query: 98  HTPTKPRFRIRFILTISITSRWSAPHCVLHK 6
           H   K +  ++F+  + I+S W   +  LHK
Sbjct: 306 HVRCKEKHGVQFVQRVQISSAWRRAYASLHK 336


>SB_5450| Best HMM Match : eRF1_1 (HMM E-Value=2.6)
          Length = 322

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -2

Query: 98  HTPTKPRFRIRFILTISITSRWSAPHCVLHK 6
           H   K +  ++F+  + I+S W   +  LHK
Sbjct: 49  HVRCKEKHGVQFVQRVQISSAWRRAYASLHK 79


>SB_59790| Best HMM Match : VWA (HMM E-Value=0)
          Length = 4151

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +3

Query: 21   MGRRPARCYRYCKNK-PYPKSRFCRGVPDPKIRIFDLGK-KRATVDDF 158
            + RR  RC+R CK + P P    C+   D    +   G  +R T+ +F
Sbjct: 1469 IARRKQRCFRKCKGQCPGPSGPTCKVRKDLSFVVDACGSDQRYTIANF 1516


>SB_59387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 806

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +3

Query: 108 KIRIFDLGKKRATVDDFPLCVHLVSDEYEQ 197
           K+R FD  +    +DD     H  SDE ++
Sbjct: 12  KLRTFDTSEHETHLDDLKKVAHTASDESDE 41


>SB_44571| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 428

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 72  DTVYSYNIDNISLVGAPLCSPQSD 1
           +++Y  +   I LVG PLC+ Q D
Sbjct: 259 NSLYESSYHGIPLVGVPLCADQFD 282


>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 6725

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -3

Query: 193 SYSSDTKCTHSGKSSTVALFLPK-SKIRIFGSGTPR 89
           SY+   +CTH+     + LF+PK +++ + G    R
Sbjct: 447 SYTGLPRCTHTAPDIGLLLFVPKMTRVMLEGGSLTR 482


>SB_52361| Best HMM Match : EutS (HMM E-Value=1)
          Length = 682

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 151 STVALFLPKSKIRIFGSGTPRQNRDLGYGLFLQYR*HLAGR 29
           STVA+FLP  ++R   + T R   ++ + L +    H A R
Sbjct: 122 STVAMFLPDRQVRHKKAETTRMRSEMPHQLAIGLAIHQAVR 162


>SB_39849| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 68

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = +3

Query: 48  RYCKNKPYPKSRFCRG-VPDPKIRI 119
           R CK +P P    CR  + DP+ R+
Sbjct: 41  RRCKRRPVPSLHACRSTLEDPQYRV 65


>SB_26957| Best HMM Match : PDZ (HMM E-Value=0)
          Length = 1685

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 174 SARIVGSHPLSLSFCPSRKYGSLG 103
           S ++V  HP  L + P R Y +LG
Sbjct: 60  SGKLVKPHPSKLFYIPQRPYMTLG 83


>SB_21044| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 1507

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 101 RHTPTKPRFRIRFILTISITSRWSAPHCVL 12
           RH  +K  +RI+  + + I  RW AP C+L
Sbjct: 393 RHLYSKHYYRIQGRVILPI--RWMAPECIL 420


>SB_19342| Best HMM Match : Keratin_B2 (HMM E-Value=0.41)
          Length = 1093

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 184 SDTKCTHSGKSSTVALFLPKSKIR 113
           S TK TH+ K+ST    +PKS  R
Sbjct: 282 SRTKDTHTPKTSTPTAIIPKSTDR 305


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,270,754
Number of Sequences: 59808
Number of extensions: 135277
Number of successful extensions: 540
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 16,821,457
effective HSP length: 48
effective length of database: 13,950,673
effective search space used: 292964133
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)