Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_N12
(210 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C) cont... 110 1e-25
At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) / Wi... 110 1e-25
At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Near... 109 2e-25
At1g53180.1 68414.m06027 expressed protein 31 0.14
At5g10650.1 68418.m01233 zinc finger (C3HC4-type RING finger) fa... 28 0.74
At3g15115.1 68416.m01912 expressed protein 27 1.7
At1g19510.1 68414.m02430 myb family transcription factor contain... 27 2.3
At3g19680.1 68416.m02493 expressed protein 26 3.0
At4g20110.1 68417.m02943 vacuolar sorting receptor, putative sim... 26 3.9
At5g39180.1 68418.m04742 germin-like protein, putative similar t... 25 5.2
At5g39150.1 68418.m04736 germin-like protein, putative similar t... 25 5.2
At5g39120.1 68418.m04733 germin-like protein, putative similar t... 25 5.2
At2g17150.1 68415.m01980 RWP-RK domain-containing protein simila... 25 5.2
At2g11810.1 68415.m01269 1,2-diacylglycerol 3-beta-galactosyltra... 25 5.2
At2g02230.1 68415.m00161 F-box family protein / SKP1 interacting... 25 5.2
At5g17890.1 68418.m02098 LIM domain-containing protein / disease... 25 9.1
At1g40080.1 68414.m04737 hypothetical protein member of hypothet... 25 9.1
>At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C)
contains Pfam profile: PF00826: Ribosomal L10
Length = 221
Score = 110 bits (264), Expect = 1e-25
Identities = 48/63 (76%), Positives = 53/63 (84%)
Frame = +3
Query: 21 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 200
MGRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
Query: 201 SSE 209
SSE
Sbjct: 61 SSE 63
>At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) /
Wilm's tumor suppressor protein-related similar to tumor
suppressor GI:575354 from [Oryza sativa]
Length = 220
Score = 110 bits (264), Expect = 1e-25
Identities = 48/63 (76%), Positives = 53/63 (84%)
Frame = +3
Query: 21 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 200
MGRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
Query: 201 SSE 209
SSE
Sbjct: 61 SSE 63
>At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Nearly
identical to ribosomal protein L10.e, Wilm's tumor
suppressor homologue, gi|17682 (Z15157), however
differences in sequence indicate this is a different
member of the L10 family
Length = 221
Score = 109 bits (263), Expect = 2e-25
Identities = 48/63 (76%), Positives = 53/63 (84%)
Frame = +3
Query: 21 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 200
MGRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENV 60
Query: 201 SSE 209
SSE
Sbjct: 61 SSE 63
>At1g53180.1 68414.m06027 expressed protein
Length = 358
Score = 30.7 bits (66), Expect = 0.14
Identities = 18/43 (41%), Positives = 23/43 (53%)
Frame = +3
Query: 6 FVENTMGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGK 134
F EN RR +R RYC + PYP S P+ K+ D+GK
Sbjct: 20 FFENLFTRR-SRGLRYCHSDPYPSSSSTSTSPE-KMGDSDIGK 60
>At5g10650.1 68418.m01233 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 525
Score = 28.3 bits (60), Expect = 0.74
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -1
Query: 144 SLSFCPSRKYGSLGQAH 94
SLSFCPS Y S G+ H
Sbjct: 327 SLSFCPSNIYSSTGRVH 343
>At3g15115.1 68416.m01912 expressed protein
Length = 339
Score = 27.1 bits (57), Expect = 1.7
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 6 FVENTMGRRPARCYRYCKNKPYP 74
F +N + RR +R RYC + PYP
Sbjct: 26 FFDNLLDRR-SRILRYCHSDPYP 47
>At1g19510.1 68414.m02430 myb family transcription factor contains
PFAM profile: PF00249 myb-like DNA binding domain
Length = 100
Score = 26.6 bits (56), Expect = 2.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 96 VPDPKIRIFDLGKKRATVDDFPL 164
VP PK + D+G K +DDF L
Sbjct: 69 VPLPKYKTVDVGSKSRGIDDFDL 91
>At3g19680.1 68416.m02493 expressed protein
Length = 491
Score = 26.2 bits (55), Expect = 3.0
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 184 SDTKCTHSGKSSTVALFLPKSKIRIFGS 101
S+T+C+ SG STVA SK +I S
Sbjct: 69 SETRCSSSGNVSTVAACFSLSKAQIEAS 96
>At4g20110.1 68417.m02943 vacuolar sorting receptor, putative
similar to BP-80 vacuolar sorting receptor [Pisum
sativum] GI:1737222; identical to vacuolar sorting
receptor-like protein (GI:2827665) [Arabidopsis
thaliana]
Length = 625
Score = 25.8 bits (54), Expect = 3.9
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +3
Query: 51 YCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDE 188
+CK++ R+C P+ R GK + LCVH V++E
Sbjct: 248 HCKSQCINHGRYCAPDPEDNFREGYEGKDVVLENLRQLCVHRVANE 293
>At5g39180.1 68418.m04742 germin-like protein, putative similar to
germin-like protein (GLP6) - Arabidopsis thaliana,
EMBL:U75194 [SP|P92997]
Length = 221
Score = 25.4 bits (53), Expect = 5.2
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
Frame = +3
Query: 66 PYPKSRFCRGVPDPKIRIFDLGK-----KRATVDDF 158
P P FC + DPK +F GK K+A +DF
Sbjct: 24 PSPLQDFCVAIDDPKNGVFVNGKFCKDPKQAKAEDF 59
>At5g39150.1 68418.m04736 germin-like protein, putative similar to
germin -like protein GLP6, Arabidopsis thaliana,
EMBL:ATU75194 [SP|P92997]; contains PS00725 Germin
family signature
Length = 221
Score = 25.4 bits (53), Expect = 5.2
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
Frame = +3
Query: 66 PYPKSRFCRGVPDPKIRIFDLGK-----KRATVDDF 158
P P FC + DPK +F GK K+A +DF
Sbjct: 24 PSPLQDFCVAIDDPKNGVFVNGKFCKDPKQAKAEDF 59
>At5g39120.1 68418.m04733 germin-like protein, putative similar to
germin -like protein GLP6, Arabidopsis thaliana,
EMBL:ATU75194 [SP|P92997]
Length = 221
Score = 25.4 bits (53), Expect = 5.2
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
Frame = +3
Query: 66 PYPKSRFCRGVPDPKIRIFDLGK-----KRATVDDF 158
P P FC + DPK +F GK K+A +DF
Sbjct: 24 PSPLQDFCVAIDDPKNGVFVNGKFCKDPKQAKAEDF 59
>At2g17150.1 68415.m01980 RWP-RK domain-containing protein similar
to nodule inception protein [Lotus japonicus]
GI:6448579; contains Pfam profile: PF02042 RWP-RK domain
Length = 909
Score = 25.4 bits (53), Expect = 5.2
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -1
Query: 150 PLSLSFCPSRKYGSLGQAHPDK 85
PL+LS+ P + G +G H D+
Sbjct: 324 PLALSWAPCARQGKVGSRHSDE 345
>At2g11810.1 68415.m01269 1,2-diacylglycerol
3-beta-galactosyltransferase, putative /
monogalactosyldiacylglycerol synthase, putative / MGDG
synthase, putative identical to
monogalactosyldiacylglycerol synthase type C
[gi:9927295] from Arabidopsis thaliana, similar to MGDG
synthase type A [gi:9884651] from Glycine max
Length = 465
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 36 ARCYRYCKNKPYPKSRFCRGVPDPKIRIFDL 128
+RCY C +K K G+ D +IR+F L
Sbjct: 224 SRCY--CPSKEVAKRALVDGLDDSQIRVFGL 252
>At2g02230.1 68415.m00161 F-box family protein / SKP1 interacting
partner 3-related contains similarity to SKP1
interacting partner 3 GI:10716951 from [Arabidopsis
thaliana]
Length = 317
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 82 GFVGVCLTQRSVFSTWAKRERQWMTSHYA 168
GFVG T++SV+ + + TSHY+
Sbjct: 208 GFVGKVATKKSVYFESGNADSRSATSHYS 236
>At5g17890.1 68418.m02098 LIM domain-containing protein / disease
resistance protein-related low similarity to disease
resistance protein RPP4 [Arabidopsis thaliana]
GI:20270890; contains Pfam profiles PF00412: LIM domain,
PF00931: NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1613
Score = 24.6 bits (51), Expect = 9.1
Identities = 10/39 (25%), Positives = 18/39 (46%)
Frame = -2
Query: 149 HCRSLFAQVENTDLWVRHTPTKPRFRIRFILTISITSRW 33
H S+F N V+H K F ++F+ + S++
Sbjct: 518 HIESIFLDTSNVKFDVKHDAFKNMFNLKFLKIYNSCSKY 556
>At1g40080.1 68414.m04737 hypothetical protein member of
hypothetical protein common family
Length = 154
Score = 24.6 bits (51), Expect = 9.1
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = -2
Query: 161 WEVIHCRSLFAQVENTDLWVRHTPTKPRFRIR 66
W V H + +F + N + H P +P +R
Sbjct: 105 WNVTHDKPVFIDMNNEKRCIMHPPFQPGRMVR 136
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,956,235
Number of Sequences: 28952
Number of extensions: 89388
Number of successful extensions: 260
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 12,070,560
effective HSP length: 49
effective length of database: 10,651,912
effective search space used: 213038240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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