Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_N11
         (524 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40415-5|AAK39251.1|  655|Caenorhabditis elegans Hypothetical pr...    32   0.29 
AL023835-10|CAA19494.2|  691|Caenorhabditis elegans Hypothetical...    30   0.88 
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p...    29   2.0  
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt...    29   2.0  
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr...    29   2.7  

>U40415-5|AAK39251.1|  655|Caenorhabditis elegans Hypothetical
           protein K02G10.5 protein.
          Length = 655

 Score = 31.9 bits (69), Expect = 0.29
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 386 IEKCAENCISTPEYNPVCGSDN-*TYKNQGRLFCAQNCGVK 505
           +E C+ENC     +NPVC  D+  T+ +     CA   G+K
Sbjct: 442 LETCSENCHCDSFFNPVCSEDSKLTFLSPCHAGCADMPGIK 482


>AL023835-10|CAA19494.2|  691|Caenorhabditis elegans Hypothetical
           protein Y37A1B.11 protein.
          Length = 691

 Score = 30.3 bits (65), Expect = 0.88
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = +3

Query: 321 KHRYQVKGKHQLLALVEHHDKQLRNARRIAFQHQNTTPCVVAIIKLTKTREDYF 482
           + R++ + +H   AL +H  ++L   +R A     +  CV+++IK   + E  F
Sbjct: 81  EQRHRRRRRHNETALEDHLSEKLSREKRAAAHIMRSRKCVISVIKKMSSMECSF 134


>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
           protein F41G3.12 protein.
          Length = 1483

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 416 TPEYNPVCGSDN*TYKNQGRL 478
           T E+  VCGSD  TY N+ RL
Sbjct: 469 TDEFKEVCGSDGKTYSNECRL 489


>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
           protein) homologfamily member protein.
          Length = 1473

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 416 TPEYNPVCGSDN*TYKNQGRL 478
           T E+  VCGSD  TY N+ RL
Sbjct: 477 TDEFKEVCGSDGKTYSNECRL 497


>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
           protein F29G6.1 protein.
          Length = 1170

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +2

Query: 404 NCISTPEYNPVCGSDN*TYKNQGRLFCAQ 490
           +C       PVCG+DN TY N   L C Q
Sbjct: 18  DCDCPSVIRPVCGTDNVTYNNLCFLRCVQ 46



 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 377 RQTIEKCAENCISTPEYNPVCGSDN*TYKN 466
           R + + C  NC +T E++PVC ++   Y+N
Sbjct: 109 RCSSKDCNHNCTNT-EFDPVCDTNGSVYRN 137


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,053,458
Number of Sequences: 27780
Number of extensions: 287747
Number of successful extensions: 714
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)