Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_N08
         (435 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0517 - 25118232-25118730,25119002-25119273                       28   2.9  
03_02_0269 + 7001891-7002212,7003598-7004037                           28   2.9  
11_04_0321 - 16359390-16359539,16359674-16359746,16360448-163608...    27   5.0  
12_02_0216 + 15804110-15804284,15804341-15804351                       27   8.7  
12_01_0427 + 3359766-3360092,3360425-3360541,3360738-3360893,336...    27   8.7  
03_02_0721 - 10677286-10678018,10679293-10679373,10682516-106826...    27   8.7  

>03_05_0517 - 25118232-25118730,25119002-25119273
          Length = 256

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +2

Query: 113 DPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRY 223
           D FF++    P GN     T P  VD   P  P + +
Sbjct: 37  DWFFTRKGESPQGNISKEETAPTGVDVTDPGRPGRAF 73


>03_02_0269 + 7001891-7002212,7003598-7004037
          Length = 253

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 248 SHHGREGCRIAWVDNWDD*NRR 183
           + H R+  R+AW D W D +R+
Sbjct: 62  TEHARQRMRVAWADGWVDGSRK 83


>11_04_0321 -
           16359390-16359539,16359674-16359746,16360448-16360845,
           16360919-16362673,16362751-16362861,16363745-16363962,
           16364088-16364196
          Length = 937

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 206 YPPKRYDNPLARGGK 250
           YPPKRY NP+   G+
Sbjct: 859 YPPKRYSNPVGPAGR 873


>12_02_0216 + 15804110-15804284,15804341-15804351
          Length = 61

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +2

Query: 71  PSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAF 184
           P+    +H V      FF+  SN  SGNY   + G  F
Sbjct: 15  PAPPYKNHTVAGADGWFFNATSNTTSGNYSDWAAGETF 52


>12_01_0427 +
           3359766-3360092,3360425-3360541,3360738-3360893,
           3361009-3361144,3361303-3361436,3361832-3361987,
           3362496-3362594,3362817-3362932,3363358-3363532,
           3363807-3363885,3363989-3364132,3364206-3364319,
           3364415-3364536,3364929-3365011,3365091-3365188,
           3365300-3365420,3366237-3366333,3366782-3366874,
           3366948-3367053,3367395-3367540,3367617-3367697,
           3367838-3367921,3367997-3368132,3368334-3368400,
           3368943-3369102
          Length = 1048

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -1

Query: 429 FFFFNMLQKRKFYLNFVNYNKHKKRNIYINAFTK 328
           F+F  +LQ+     +F+N+  H KR +Y++   K
Sbjct: 141 FYFRGILQECFHEKDFLNHRYHAKRCLYLHVIEK 174


>03_02_0721 -
           10677286-10678018,10679293-10679373,10682516-10682645,
           10682969-10683101
          Length = 358

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +2

Query: 65  RVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGP 178
           R  SD      V+ +P+   SQP+NG SG       GP
Sbjct: 210 RAQSDEARSGSVVVDPEEPSSQPNNGSSGGGGGTPDGP 247


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,415,623
Number of Sequences: 37544
Number of extensions: 198336
Number of successful extensions: 464
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)