Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_N07
         (330 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    25   2.2  
SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy...    24   6.8  

>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -1

Query: 270 NARARAGSTPAK*YLSH 220
           NAR   GS PAK Y+SH
Sbjct: 151 NARRGQGSEPAKAYMSH 167


>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
 Frame = -2

Query: 110 YIQYNFIKNLPDRFVFLVSY---HRFDHSL*Y 24
           ++ +NF+ +L   F+F+  Y   H F   L Y
Sbjct: 206 HVSFNFVNSLKQTFIFMQPYLLSHMFPQFLVY 237


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,066,514
Number of Sequences: 5004
Number of extensions: 13928
Number of successful extensions: 25
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)