Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_N07
         (330 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0456 + 10489544-10491064,10491506-10491632,10491633-10492606     30   0.38 
02_01_0427 - 3124209-3124307,3124453-3125240,3125510-3125867,312...    27   3.6  

>02_02_0456 + 10489544-10491064,10491506-10491632,10491633-10492606
          Length = 873

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +2

Query: 2   LNLTWGDHIKENGQNGDS-SLKIQNGLEGSL 91
           L+  W D +KENGQ  +   L ++NGL+GS+
Sbjct: 310 LDDVWDDALKENGQCWERLCLPLENGLQGSM 340


>02_01_0427 -
           3124209-3124307,3124453-3125240,3125510-3125867,
           3125902-3126567
          Length = 636

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 119 FSLYIQYNFIKNLPDRFVFLVSYHRFDHSL 30
           FS +I  NF  NLP   V  +SY++F  S+
Sbjct: 179 FSGHIPTNFCTNLPSLAVLELSYNQFSGSI 208


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,364,602
Number of Sequences: 37544
Number of extensions: 74256
Number of successful extensions: 220
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)