Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_N06
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit...    26   5.0  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    25   8.7  
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar...    25   8.7  

>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
           Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 546

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 373 KMLLDDVEQMIREGILTGKIERRDGTMINLKKPEDVEMLARLILGG 510
           K  LDD+E+ I +G+   K   +D  +I      D+++  RLI  G
Sbjct: 382 KTYLDDLERAIDDGVNIVKALVKDNRLIFGAGASDMQLCIRLISVG 427


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 1/97 (1%)
 Frame = +1

Query: 16  RKGVRRSLSEDDKYSYFTEDVDLNTYMYYLHMNYPYWMTDEVYGLNKERQGEILMYANSQ 195
           ++GV+   S   KY Y  E  D+     YL + Y Y        L       +    N+ 
Sbjct: 405 KRGVKEWKSRVSKYKYAFELEDVPRTADYLEVIYSYSYPALPTDLTGSSFSHV-FGTNTA 463

Query: 196 LLARLRMERLSHKMCDIKMFMWN-EPVKNGYWPKIRL 303
           L  +  + R     C +K+   N + VKN  W ++ +
Sbjct: 464 LFEQFVLSRRVMGPCWLKIQQPNFDAVKNASWCRVEI 500


>SPAC22F8.06 |pam1||20S proteasome component beta
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 225

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 115 YPYWMTDEVYGLNKERQGEILMY 183
           +PY++   V G++KE +GEI  +
Sbjct: 106 FPYYVYTTVAGIDKEGKGEIYSF 128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,385,064
Number of Sequences: 5004
Number of extensions: 46829
Number of successful extensions: 119
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)