Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_N06
         (614 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0997 - 23203166-23203330,23203627-23203693,23203771-232038...    28   5.1  
07_03_0935 - 22738221-22738328,22739207-22739237,22739901-227400...    27   8.9  
03_02_1034 + 13555569-13556084,13556096-13556527                       27   8.9  
01_07_0310 + 42660671-42660795,42660996-42661026,42662958-426630...    27   8.9  
01_03_0107 - 12613491-12613538,12613906-12614139,12614682-126147...    27   8.9  
01_01_0513 + 3736893-3737047,3737298-3737340,3737631-3737765,373...    27   8.9  

>07_03_0997 -
           23203166-23203330,23203627-23203693,23203771-23203862,
           23204820-23204956,23205050-23205116,23205212-23205278,
           23205356-23205441,23206061-23206153,23206337-23206522,
           23207316-23207372,23207455-23207582,23207662-23207731,
           23207815-23207950,23208378-23208529,23208606-23208680,
           23208765-23208929,23209063-23209128,23209229-23209333,
           23209929-23210132,23210462-23211715
          Length = 1123

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 367 KLKMLLDDVEQMIREGILTGKIERRDGTMINLKKPEDVEM 486
           KL +LL + +QM++EG LT      D +  + KK  D  M
Sbjct: 515 KLLVLLQNGKQMVQEGALTALASVADSSQEHFKKYYDAVM 554


>07_03_0935 -
           22738221-22738328,22739207-22739237,22739901-22740095,
           22740693-22740782,22740900-22741037,22741959-22742108,
           22743589-22744766
          Length = 629

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 2/105 (1%)
 Frame = +1

Query: 100 YLHMNYPYWMTDEVYGLNKERQGEILMYANSQLLARLRMERLSHKMCDIKMFMWNEPVKN 279
           ++  N P W     YG+  +R  E L+  + +    +  E L     +++ F   E VK 
Sbjct: 344 FMVWNSPQW----AYGVRHQRGLESLLRQHPEACVVMLSETL-----ELEFFQ--EFVKE 392

Query: 280 GYWPKIRLPNGDEM--PVRQNNFVPVTSENLKLKMLLDDVEQMIR 408
           GY   + LPN DE+      ++FV V +E  K K       +++R
Sbjct: 393 GYKVAVALPNLDELLEGTLTHDFVSVWNEWRKTKYYPLHYSELVR 437


>03_02_1034 + 13555569-13556084,13556096-13556527
          Length = 315

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = +1

Query: 415 ILTGKIERRDGTMINLK---KPEDVEMLARLILGGMNVANDDA 534
           +L+G   R DG  ++ +    P D+  L R+ L G NV  D+A
Sbjct: 218 LLSGFATRSDGPELDDQLELTPRDIRRLVRMALKGKNVERDEA 260


>01_07_0310 +
           42660671-42660795,42660996-42661026,42662958-42663079,
           42663428-42663544,42663881-42663950
          Length = 154

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +1

Query: 274 KNGYWPKIRLPNGDEMPVRQNNFVPVTSENLKLKMLLDDVEQMIRE 411
           K  +W ++     D  P   N  +PV + N K K       QM+R+
Sbjct: 100 KVNFWRRLSQMKADHEPSASNKRLPVINHNYKSKRYATLTPQMMRQ 145


>01_03_0107 -
           12613491-12613538,12613906-12614139,12614682-12614713,
           12616021-12616176,12617972-12618159,12618242-12618324,
           12618821-12618976,12620320-12621162,12621197-12621550,
           12621962-12623125
          Length = 1085

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 28  RRSLSEDDKYSYFTEDVDLNTYMYYLHMN 114
           + SL  + KY   +E  DL  + YY H+N
Sbjct: 652 KNSLINNTKYIVLSESGDLQVWRYYKHVN 680


>01_01_0513 +
           3736893-3737047,3737298-3737340,3737631-3737765,
           3737879-3738010,3738129-3738278,3738353-3738373,
           3738468-3738675,3738796-3738877,3738983-3739088,
           3739245-3739358,3739458-3739685
          Length = 457

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = +1

Query: 241 DIKMFM--WNEPVKNGYWPKIRLPNGDEMPVRQNNFVPVTSENLKLKM 378
           D K F+  W E   N  WP + +P G    ++Q  F       +K++M
Sbjct: 109 DTKAFLAAWEETCNNEGWPILIIPGGRTFLLKQIKFNGSCKSPIKIQM 156


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,038,604
Number of Sequences: 37544
Number of extensions: 282964
Number of successful extensions: 607
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)