Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_N04
         (372 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    33   0.011
SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos...    26   1.6  
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo...    25   2.9  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    24   6.7  
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc...    24   6.7  
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    24   6.7  
SPAC25B8.15c |||wybutosine biosynthesis protein Tyw3|Schizosacch...    24   6.7  
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch...    24   8.8  
SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l...    24   8.8  

>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 33.5 bits (73), Expect = 0.011
 Identities = 22/73 (30%), Positives = 33/73 (45%)
 Frame = +2

Query: 74  MTKAQQTLSAKNYPSWVHVTRVLQGTEPAAFKQYFSTWRDVGMSHSRLV*KQ*MVNDCHR 253
           +++    L+  NY    H+TRV  GT+  +     S + D   S  + +  Q   NDC  
Sbjct: 675 ISQVNSLLNDYNYNRQSHITRVYSGTDDGS---SVSIFEDTSSSTKQKIFDQPTTNDCDV 731

Query: 254 HRIRIYLLSASVK 292
            R R Y  SA +K
Sbjct: 732 MRPRQYSYSAGMK 744


>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +2

Query: 32  WIGKQSTEKEKSEAMTKAQQTLSAKNYPSWVHVTR 136
           W GK  +E +K  A +      S K +  W  +TR
Sbjct: 304 WTGKNISETQKIVAYSHLYSFTSVKCFVHWAQITR 338


>SPBC1773.09c |mug184||meiotically upregulated gene
           Mug184|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 162 PSNNTSRPGGTWACHIPDWSRSSK 233
           PS+N ++P  +  C+IP ++ S K
Sbjct: 263 PSSNAAKPSNSEECNIPKFNSSFK 286


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 70   SHDKSPANSVS*KLSILGPRNQSTAG 147
            S +  PA+ V   L  LGP  Q+TAG
Sbjct: 2011 SEEFFPADLVILALGFLGPEEQATAG 2036


>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
           Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 147 ALSRLPSNNTSRPGGTWACHIPDWSRSSKWLM 242
           AL   P+  +S     +  H+ DWSR S+W M
Sbjct: 482 ALYASPATESSPGVIYYKAHV-DWSRKSEWAM 512


>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = -3

Query: 73  GFRLFLFSRLL--PDPYVDVPTYSIQ 2
           G RL  +S L     PYV VP YSI+
Sbjct: 222 GLRLLAYSLLFMYQFPYVSVPIYSIR 247


>SPAC25B8.15c |||wybutosine biosynthesis protein
           Tyw3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 237

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = +2

Query: 251 RHRIRIYLLSASVKLQFYIT 310
           R  I I  L+AS KLQFYIT
Sbjct: 165 RMDIPIGCLTASEKLQFYIT 184


>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 463

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 47  STEKEKSEAMTKAQQTLSAKNYPSWVHVTRVLQGTEPAA 163
           +T   +SEA T +    SA  YP + H  R++  T+P A
Sbjct: 292 TTAASQSEAATPSP---SAAVYPLFPHGIRLIDSTKPEA 327


>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
           ligase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 788

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 137 VLQGTEPAAFKQYFST 184
           V+QG EP  F  YF+T
Sbjct: 527 VVQGAEPLIFLDYFAT 542


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,497,374
Number of Sequences: 5004
Number of extensions: 28518
Number of successful extensions: 70
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)