Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_N04
(372 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0001 + 13611070-13611172,13611812-13611873,13612001-136120... 48 3e-06
06_03_0999 - 26752410-26752523,26752601-26752830,26752914-267531... 45 2e-05
08_01_0871 + 8502396-8502417,8503606-8503732,8503891-8503990,850... 32 0.17
03_05_0449 - 24437994-24438157,24438265-24438383,24438489-24438760 30 0.67
05_01_0120 - 828834-831143 28 2.0
06_03_0455 + 20978658-20978677,20979104-20979608 27 3.6
>03_03_0001 +
13611070-13611172,13611812-13611873,13612001-13612072,
13612158-13612394,13612473-13612650,13612731-13612863,
13613686-13613845,13613925-13614078,13614159-13614262,
13614354-13614512,13615399-13615467,13615543-13615611,
13615772-13615909,13616044-13616124,13616805-13616933,
13617717-13617864,13618007-13618017,13618094-13618234,
13618314-13618439,13619164-13619220,13619355-13619453,
13619540-13619762,13620236-13620480,13621325-13621438
Length = 1003
Score = 47.6 bits (108), Expect = 3e-06
Identities = 17/56 (30%), Positives = 33/56 (58%)
Frame = +2
Query: 20 NIYVWIGKQSTEKEKSEAMTKAQQTLSAKNYPSWVHVTRVLQGTEPAAFKQYFSTW 187
++++W+G+ + +E+ A ++ ++ +N P VTRV+QG E FK F +W
Sbjct: 293 DLFIWVGRLTQVEERKAASAAVEEFIATQNRPKTTRVTRVIQGYENHTFKSKFESW 348
Score = 36.3 bits (80), Expect = 0.008
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Frame = +2
Query: 2 LDTVSGNIYVWIGKQSTEKEKSEA----MTKAQQTLSAKNYPSWVHVTRVLQGTEPAAFK 169
LDT G ++VW+G+ KEK +A A+ + ++ V + +V++G EP F+
Sbjct: 689 LDT-HGEVFVWMGQCVDAKEKQKAFEIGQKYAEHAAAFESLSPDVPLYKVVEGNEPCFFR 747
Query: 170 QYFS 181
YFS
Sbjct: 748 TYFS 751
Score = 28.7 bits (61), Expect = 1.5
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +2
Query: 20 NIYVWIGKQSTEKEKSEAMTKAQQTLSAKNYPSWVHVTRVLQGTEPAAFKQYF 178
+I+ WIGK S++ E A K + + + H R LQG E F YF
Sbjct: 68 DIHFWIGKDSSQDEAGTAAIKTVELDTMLGGRAVQH--RELQGYESDKFLSYF 118
>06_03_0999 -
26752410-26752523,26752601-26752830,26752914-26753169,
26753763-26753828,26753921-26754046,26754148-26754288,
26754377-26754387,26754523-26754670,26755326-26755454,
26755573-26755710,26755808-26755876,26755955-26756023,
26756565-26756720,26756885-26756985,26757068-26757215,
26757540-26757702,26757833-26757965,26758049-26758226,
26758330-26758572,26758664-26758732,26759063-26759187,
26759727-26759766,26760756-26760812,26762831-26762935
Length = 1004
Score = 45.2 bits (102), Expect = 2e-05
Identities = 19/55 (34%), Positives = 33/55 (60%)
Frame = +2
Query: 23 IYVWIGKQSTEKEKSEAMTKAQQTLSAKNYPSWVHVTRVLQGTEPAAFKQYFSTW 187
IYVW+G+++ +E+ A + A++ L N P H+ R+++G E F+ FS W
Sbjct: 350 IYVWMGRETPLEERKRAGSAAEELLREVNRPK-SHIVRLMEGFETVIFRSKFSKW 403
Score = 26.2 bits (55), Expect = 8.2
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +2
Query: 20 NIYVWIGKQSTEKEKSEAMTKAQQTLSAKNYPSWVHVTRVLQGTEPAAFKQYF 178
+I+ W+GK +++ E A K + +A + + R +QG E F YF
Sbjct: 121 DIHYWLGKDTSQDEAGTAAIKTVELDAALGGRAVQY--REVQGNETERFLSYF 171
>08_01_0871 +
8502396-8502417,8503606-8503732,8503891-8503990,
8504725-8504793,8504870-8505043,8505196-8505373,
8505462-8505594,8505702-8505864,8507031-8507181,
8507266-8507366,8507633-8507788,8508105-8508173,
8508256-8508324,8508403-8508540,8508639-8508767,
8509013-8509053,8510019-8510106,8510199-8510339,
8510428-8510553,8510671-8510736,8510994-8511291,
8511387-8511595,8511689-8511802
Length = 953
Score = 31.9 bits (69), Expect = 0.17
Identities = 16/60 (26%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Frame = +2
Query: 20 NIYVWIGKQSTEKEKSEAMTKAQQTLS----AKNYPSWVHVTRVLQGTEPAAFKQYFSTW 187
+I+VW+G+Q K + +A+ ++ + +N S + +++G+EP F ++F TW
Sbjct: 661 DIFVWVGQQVDVKVRLQALDIGEKFVKLDFLMENLSSDTPIFVIMEGSEPTFFTRFF-TW 719
>03_05_0449 - 24437994-24438157,24438265-24438383,24438489-24438760
Length = 184
Score = 29.9 bits (64), Expect = 0.67
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +3
Query: 174 TSRPGGTWACHIPDWSRSSKWLMIATVIGFAYICYPPVSNYNSI 305
T P WA +P + + L + +GF ++ PP +++N+I
Sbjct: 86 TYYPSRYWALAVPSFVIVATALCMVVYVGFNFLATPPPTSFNTI 129
>05_01_0120 - 828834-831143
Length = 769
Score = 28.3 bits (60), Expect = 2.0
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +2
Query: 11 VSGNIYVWIGKQSTEKEKSEAMTKAQQTLSAKNYPSWVHVTRVLQGTEPAAFKQYFST 184
V +IYVW+G + + + +A A Q + + H+ V +G+E F FS+
Sbjct: 334 VLSSIYVWVGMKCDQVMEKDARAAAFQVVRYEKVQG--HIKVVREGSEVPEFWDAFSS 389
>06_03_0455 + 20978658-20978677,20979104-20979608
Length = 174
Score = 27.5 bits (58), Expect = 3.6
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -3
Query: 184 GREVLFEGSRLSALQYSGYVDP 119
GRE++ +G+R++ L S Y DP
Sbjct: 144 GREMVLDGTRITKLCVSSYADP 165
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,839,168
Number of Sequences: 37544
Number of extensions: 195732
Number of successful extensions: 464
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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