Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_N04
         (372 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   2.0  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   2.0  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   2.7  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   4.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   4.7  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   6.2  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
 Frame = -3

Query: 181 REVLFEGSRLSALQYSGYV---DPRW 113
           RE++ + SR+SA   SGY+   D +W
Sbjct: 325 REIMNKESRISAAIDSGYILNNDGKW 350


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
 Frame = -3

Query: 181 REVLFEGSRLSALQYSGYV---DPRW 113
           RE++ + SR+SA   SGY+   D +W
Sbjct: 325 REIMNKESRISAAIDSGYILNNDGKW 350


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = -3

Query: 145 LQYSGYVDPRWIIFS*QSLLGFCHGFRLFLFSRLLPDPYVDVPTY 11
           + ++G   P  ++F  +SL        L    R L + +VD PT+
Sbjct: 296 IPFNGIQMPNLMVFYEKSLALAAFSLMLTSILRYLQELHVDAPTW 340


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.0 bits (42), Expect = 4.7
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 145 GH*AGCLQTILLDLEG 192
           GH +GCLQ ++  L+G
Sbjct: 290 GHWSGCLQFLVPMLQG 305


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 4.7
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 145 GH*AGCLQTILLDLEG 192
           GH +GCLQ ++  L+G
Sbjct: 258 GHWSGCLQFLVPMLQG 273


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 20.6 bits (41), Expect = 6.2
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 289 DTGG*QIYANPMTVAIIN 236
           D+GG  ++ NP T  ++N
Sbjct: 348 DSGGPVLWQNPRTKRLVN 365


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,519
Number of Sequences: 438
Number of extensions: 2095
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8928360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)