Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_N04
(372 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g41740.1 68415.m05159 villin 2 (VLN2) nearly identical to vil... 55 1e-08
At3g57410.1 68416.m06391 villin 3 (VLN3) nearly identical to vil... 52 9e-08
At2g29890.1 68415.m03630 villin 1 (VLN1) nearly identical to vil... 34 0.026
At5g57320.1 68418.m07160 villin, putative similar to villin 2 (V... 34 0.035
At4g30160.1 68417.m04289 villin, putative similar to villin 2 (... 33 0.061
At4g37750.1 68417.m05344 ovule development protein aintegumenta ... 27 3.0
At2g47070.1 68415.m05881 squamosa promoter-binding protein-like ... 27 3.0
At1g03320.1 68414.m00311 hypothetical protein 27 5.3
At4g15180.1 68417.m02328 SET domain-containing protein contains ... 26 7.0
At3g16310.1 68416.m02059 mitotic phosphoprotein N' end (MPPN) fa... 26 7.0
>At2g41740.1 68415.m05159 villin 2 (VLN2) nearly identical to villin
2 (VLN2) [Arabidopsis thaliana] GI:3415115
Length = 976
Score = 55.2 bits (127), Expect = 1e-08
Identities = 22/55 (40%), Positives = 35/55 (63%)
Frame = +2
Query: 23 IYVWIGKQSTEKEKSEAMTKAQQTLSAKNYPSWVHVTRVLQGTEPAAFKQYFSTW 187
IY+W+G+ + E+ A A++ L+++N P HVTRV+QG E +FK F +W
Sbjct: 288 IYIWVGRVTQVDERKAASQSAEEFLASENRPKATHVTRVIQGYESHSFKSNFDSW 342
Score = 31.5 bits (68), Expect = 0.18
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Frame = +2
Query: 2 LDTVSGNIYVWIGKQSTEKEKSEAMTKAQQTLSAKNYPSWVH----VTRVLQGTEPAAFK 169
LDT ++VW+G+ KEK Q+ + +H + ++ +G EP F
Sbjct: 654 LDT-HAEVFVWVGQCVEPKEKQTVFEIGQKYIDLAGSLEGLHPKVPIYKINEGNEPCFFT 712
Query: 170 QYFS 181
YFS
Sbjct: 713 TYFS 716
Score = 27.5 bits (58), Expect = 3.0
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +2
Query: 20 NIYVWIGKQSTEKEKSEAMTKAQQTLSAKNYPSWVHVTRVLQGTEPAAFKQYF 178
+I+ WIGK +++ E A K + + + H R +QG E F YF
Sbjct: 62 DIHFWIGKDTSQDEAGTAAVKTVELDAVLGGRAVQH--REIQGHESDKFLSYF 112
>At3g57410.1 68416.m06391 villin 3 (VLN3) nearly identical to villin
3 (VLN3) [Arabidopsis thaliana] GI:3415117
Length = 965
Score = 52.4 bits (120), Expect = 9e-08
Identities = 19/55 (34%), Positives = 36/55 (65%)
Frame = +2
Query: 23 IYVWIGKQSTEKEKSEAMTKAQQTLSAKNYPSWVHVTRVLQGTEPAAFKQYFSTW 187
I++W+G+ + +E+ A+ A+ ++++N P +TRV+QG EP +FK F +W
Sbjct: 290 IFIWVGRVTQVEERKTAIQAAEDFVASENRPKATRITRVIQGYEPHSFKSNFDSW 344
Score = 33.1 bits (72), Expect = 0.061
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Frame = +2
Query: 2 LDTVSGNIYVWIGKQSTEKEKSEAMTKAQQTL----SAKNYPSWVHVTRVLQGTEPAAFK 169
LDT ++VW+G+ KEK A Q+ + S + V + ++ +G EP F
Sbjct: 656 LDT-HAEVFVWVGQCVDPKEKQTAFEIGQRYINLAGSLEGLSPKVPLYKITEGNEPCFFT 714
Query: 170 QYFS 181
YFS
Sbjct: 715 TYFS 718
Score = 26.6 bits (56), Expect = 5.3
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +2
Query: 20 NIYVWIGKQSTEKEKSEAMTKAQQTLSAKNYPSWVHVTRVLQGTEPAAFKQYF 178
+I+ WIGK +++ E A K + +A + + R +QG E F YF
Sbjct: 64 DIHFWIGKDTSQDEAGTAAVKTVELDAALGGRAVQY--REIQGHESDKFLSYF 114
>At2g29890.1 68415.m03630 villin 1 (VLN1) nearly identical to villin
1 (VLN1) [Arabidopsis thaliana] GI:3415113
Length = 909
Score = 34.3 bits (75), Expect = 0.026
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = +2
Query: 23 IYVWIGKQSTEKEKSEAMTKAQQTLSAKNYPSWVHVTRVLQGTEPAAFKQYFST 184
+YVWIG +S ++++++A+T A + S + + QG EP+ F F +
Sbjct: 434 LYVWIGCESIQQDRADAITNASAIVGTTKGES--VLCHIYQGNEPSRFFPMFQS 485
Score = 31.5 bits (68), Expect = 0.18
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Frame = +2
Query: 23 IYVWIGKQSTEKEKSEAMTKA----QQTLSAKNYPSWVHVTRVLQGTEPAAFKQYF 178
+YVWIG S K K EA+T + + + V V +G EP F ++F
Sbjct: 658 VYVWIGSNSNIKSKEEALTLGLKFLEMDILEEGLTMRTPVYVVTEGHEPPFFTRFF 713
>At5g57320.1 68418.m07160 villin, putative similar to villin 2
(VLN2) [Arabidopsis thaliana] GI:3415115, villin 3
(VLN3) [Arabidopsis thaliana] GI:3415117; contains Pfam
profiles PF00626: Gelsolin repeat, PF02209: Villin
headpiece domain
Length = 962
Score = 33.9 bits (74), Expect = 0.035
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Frame = +2
Query: 23 IYVWIGKQSTEKEKSEAMTKAQQTLS----AKNYPSWVHVTRVLQGTEPAAFKQYFSTW 187
++VW+G+Q K+K +A+ + L +N S + V +G EP F ++F TW
Sbjct: 663 VFVWVGQQVDPKKKPQALDIGENFLKHDFLLENLASETPIYIVTEGNEPPFFTRFF-TW 720
Score = 29.5 bits (63), Expect = 0.75
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +2
Query: 32 WIGKQSTEKEKSEAMTKAQQTL-SAKNYPSWVHVTRVLQGTEPAAF 166
W GKQS E++++ A++ A + + S K P+ R+ +G EP F
Sbjct: 442 WFGKQSVEEDRASAISLANKMVESMKFVPA---QARINEGKEPIQF 484
>At4g30160.1 68417.m04289 villin, putative similar to villin 2
(VLN2) [Arabidopsis thaliana] GI:3415115, villin 3
(VLN3) [Arabidopsis thaliana] GI:3415117; contains Pfam
profiles PF00626: Gelsolin repeat, PF02209: Villin
headpiece domain
Length = 974
Score = 33.1 bits (72), Expect = 0.061
Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Frame = +2
Query: 23 IYVWIGKQSTEKEKSEAMTKAQQ-----TLSAKNYPSWVHVTRVLQGTEPAAFKQYFSTW 187
I+VW+G++ K K A+T ++ +L K P + +++G EP+ F ++F++W
Sbjct: 661 IFVWVGQEVVPKNKLLALTIGEKFIEKDSLLEKLSPE-APIYVIMEGGEPSFFTRFFTSW 719
Score = 31.9 bits (69), Expect = 0.14
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +2
Query: 23 IYVWIGKQSTEKEKSEAMTKAQQTL-SAKNYPSWVHVTRVLQGTEPAAF 166
I W GKQS E+E+ A++ A + + S K P+ R+ +G EP F
Sbjct: 437 IGTWFGKQSVEEERGSAVSMASKMVESMKFVPA---QARIYEGKEPIQF 482
Score = 25.8 bits (54), Expect = 9.2
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +2
Query: 20 NIYVWIGKQSTEKEKSEAMTKAQQTLSAKNYPSWVHVTRVLQGTEPAAFKQYF 178
+I+ W+GK +++ E A K + +A + + R +QG E F YF
Sbjct: 64 DIHYWLGKDTSQDEAGTAAVKTVELDAALGGRAVQY--REVQGHETEKFLSYF 114
>At4g37750.1 68417.m05344 ovule development protein aintegumenta
(ANT) identical to ovule development protein
aintegumenta (ANT) (GI:1244708) ) [Arabidopsis thaliana]
Length = 555
Score = 27.5 bits (58), Expect = 3.0
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -3
Query: 184 GREVLFEGSRLSALQYSGYVDPRWIIFS*QSLLGFCHG 71
GRE ++ S SA S V P+ ++ S G C+G
Sbjct: 35 GREAIYSSSTSSAATSSSSVPPQLVVGDNTSNFGVCYG 72
>At2g47070.1 68415.m05881 squamosa promoter-binding protein-like 1
(SPL1) identical to squamosa promoter binding
protein-like 1 [Arabidopsis thaliana] GI:5931655;
contains Pfam profile PF03110: SBP domain
Length = 881
Score = 27.5 bits (58), Expect = 3.0
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Frame = +2
Query: 29 VWIGKQSTEKEKSEAMTKAQQTLSAKNYPSWVHVT---RVLQGTEPAAFKQYFSTWRDVG 199
++I T+ E+S T S+ +YPSW+H + + + ++ A+ + S+ D
Sbjct: 301 IYIDSDDTDVERSPPPTNP--ATSSLDYPSWIHQSSPPQTSRNSDSASDQSPSSSSEDAQ 358
Query: 200 MSHSRLV*K 226
M R+V K
Sbjct: 359 MRTGRIVFK 367
>At1g03320.1 68414.m00311 hypothetical protein
Length = 220
Score = 26.6 bits (56), Expect = 5.3
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +2
Query: 5 DTVSGNIYVWIGKQSTEKEKSEAMTKAQQTLSAKNYPS 118
D + N+ W ST+KEK + + + KN PS
Sbjct: 57 DKKNKNVLRWPQDSSTKKEKGDGKNLSSEENGGKNLPS 94
>At4g15180.1 68417.m02328 SET domain-containing protein contains
Pfam profile PF00856: SET domain
Length = 2326
Score = 26.2 bits (55), Expect = 7.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 175 VLFEGSRLSALQYSGYVDPRW 113
VL +G L +Q SG+ DPRW
Sbjct: 831 VLNDGFPLCLMQKSGHEDPRW 851
>At3g16310.1 68416.m02059 mitotic phosphoprotein N' end (MPPN)
family protein contains Pfam profile PF05172: MPPN
(Mitotic PhosphoProtein N' end) (rrm-like) domain
Length = 329
Score = 26.2 bits (55), Expect = 7.0
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +2
Query: 14 SGNIYVWIGKQSTEKEKSEAMTKAQQTLSAKNYPSWVHVTRVLQGTE 154
SG V GK E S ++ AQQ+ PSW ++ TE
Sbjct: 94 SGKNIVTPGKGKLEASPSFSLLNAQQSQQVSGSPSWWSQSKAGSSTE 140
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,831,683
Number of Sequences: 28952
Number of extensions: 152971
Number of successful extensions: 405
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 497853200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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