Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_N03
(584 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.52
SB_20225| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.69
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11) 29 2.1
SB_34310| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22) 29 2.8
SB_1853| Best HMM Match : RVT_1 (HMM E-Value=5.99994e-41) 27 8.5
>SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 31.5 bits (68), Expect = 0.52
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +1
Query: 376 ALDFYQTALRDPAFYQLYXRIVGYINAFKHYLKPYPQEKLHFVGV*INDVVVEKLVTFFD 555
AL + ALR P ++Y + ++ FK LK YP H + + L+ + D
Sbjct: 180 ALRYVLDALRKPYGSKMYMFGIAALDRFKTRLKDYPHYCQHLASIPHFKEFPQSLIEYID 239
Query: 556 YSQ 564
Y Q
Sbjct: 240 YGQ 242
>SB_20225| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1548
Score = 31.1 bits (67), Expect = 0.69
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +2
Query: 317 LAMCSVQHLNHSTSTPSCPVRLTFTKPHFET 409
L+ CS+Q L +T T P+R++F++PH T
Sbjct: 1421 LSTCSLQSLTDNT-TSERPIRISFSEPHLHT 1450
>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6489
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Frame = +1
Query: 31 TGYYPLMT-SYYFPF--AQRPDNYNLHSVKNYEAIRFLDIFEKTFVQSLQKGKFESYGKK 201
T Y P T S Y Q+P+N++LH +A+ T L GKF+S G+
Sbjct: 4715 TSYQPAATDSLYISSQSTQKPNNHHLHRTCKADALEV----NVTLRGGLHAGKFKSVGRT 4770
Query: 202 IDFHD 216
D H+
Sbjct: 4771 RDVHE 4775
>SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11)
Length = 129
Score = 29.5 bits (63), Expect = 2.1
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Frame = +2
Query: 296 NDLMKLSLAMCSVQHLN--HSTSTPSCPVRLTFTKP---HFETLHS-ISYXTGLWVTLTH 457
++L +L ++ HLN HST T S LT T H +S I++ T +TLTH
Sbjct: 25 SNLTHSTLTHSNLTHLNLTHSTLTYSTLTHLTLTYSTLTHLTITYSTITHSTLTHLTLTH 84
Query: 458 SSIT*SLILKRNFISSAFKSMMLSLRN*SHS 550
++T S + S L+ +HS
Sbjct: 85 LTLTYSTLTHSTLTHSTLTHSTLTHSTLTHS 115
Score = 29.1 bits (62), Expect = 2.8
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Frame = +2
Query: 302 LMKLSLAMCSVQHLN--HSTSTPSCPVRLTFTKPHFETLHSISYXTGLWVTLTHSSIT*S 475
L L+L ++ HL +ST T S LT T H +++Y T TLTHS++T S
Sbjct: 52 LTHLTLTYSTLTHLTITYSTITHSTLTHLTLT--HL----TLTYSTLTHSTLTHSTLTHS 105
Query: 476 LILKRNFISSAFKSMMLSLRN*SH 547
+ S L+ N +H
Sbjct: 106 TLTHSTLTHSTITHSTLTHSNLTH 129
Score = 28.7 bits (61), Expect = 3.7
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = +2
Query: 338 HLNHSTSTPSCPVRLTFTKPHFETLHSISYXTGLWVTLTHSSIT*SLILKRNFISSAFKS 517
+L HST T S L T T ++++ T + TLTH +IT S I
Sbjct: 26 NLTHSTLTHSNLTHLNLTHSTL-TYSTLTHLTLTYSTLTHLTITYSTITHSTLTHLTLTH 84
Query: 518 MMLSLRN*SHS-LTIANLMPLTV 583
+ L+ +HS LT + L T+
Sbjct: 85 LTLTYSTLTHSTLTHSTLTHSTL 107
Score = 27.9 bits (59), Expect = 6.4
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +2
Query: 416 SISYXTGLWVTLTHSSIT*SLILKRNFISSAFKSMMLSLRN*SHS-LTIANLMPLTV 583
++++ T + +TLTHS++T + N S L+ N +HS LT + L LT+
Sbjct: 1 TLTHPTLIHLTLTHSNLTHLTLTHSNLTHSTLTHSNLTHLNLTHSTLTYSTLTHLTL 57
>SB_34310| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1103
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/45 (40%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = -2
Query: 223 PFHRGNQFSCHTIRICLSVGTVRKSFQKCPRTVLL-RSSLRCVDC 92
P H NQ C IC+ G KS KCP L S RC C
Sbjct: 245 PCHEANQGGCEGRAICVYTGP-GKSICKCPPGYKLDESQARCTLC 288
>SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22)
Length = 2269
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 7/51 (13%)
Frame = +1
Query: 166 LQKGKFE-----SYGKKIDFHDEKAINFVGNYWQENADL--YEEEVTKDYQ 297
L+KGKF+ S K ID E+ F+G+ W ++ DL +++E K+ Q
Sbjct: 1093 LEKGKFQVKQWCSNSKTIDKSCERYCTFLGHKWDKDRDLLTFKKEKIKETQ 1143
>SB_1853| Best HMM Match : RVT_1 (HMM E-Value=5.99994e-41)
Length = 1069
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +1
Query: 181 FESYGKKIDFHDEKAINFVGNYWQENADLYEEEVTKDYQRSYEIVAR 321
FE Y ++ DEKA ++ Y ++ A + E +RSY + +
Sbjct: 138 FEIYVSLNEWQDEKAGQYLAVYLKDEAKAFYHEQEDSVRRSYRALCK 184
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,424,029
Number of Sequences: 59808
Number of extensions: 361740
Number of successful extensions: 1019
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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