Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_N03
(584 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC084158-23|AAP31422.1| 187|Caenorhabditis elegans Hypothetical... 30 1.4
AC084158-22|AAM15623.1| 214|Caenorhabditis elegans Hypothetical... 30 1.4
AC084158-21|AAK68581.1| 271|Caenorhabditis elegans Hypothetical... 30 1.4
AF273836-1|AAG15184.1| 362|Caenorhabditis elegans nuclear recep... 29 2.4
AC024776-15|AAK68482.2| 354|Caenorhabditis elegans Nuclear horm... 29 2.4
Z81085-3|CAB03115.1| 769|Caenorhabditis elegans Hypothetical pr... 29 3.2
U58757-2|AAC47915.2| 402|Caenorhabditis elegans Hypothetical pr... 29 3.2
U80446-3|AAL77180.1| 889|Caenorhabditis elegans Nuclear pore co... 28 5.6
U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore co... 28 5.6
U41554-3|AAA83298.2| 745|Caenorhabditis elegans Nematode astaci... 28 5.6
Z82278-9|CAE17877.1| 323|Caenorhabditis elegans Hypothetical pr... 27 7.4
Z82070-8|CAE17980.1| 323|Caenorhabditis elegans Hypothetical pr... 27 7.4
Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical pr... 27 7.4
X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy ch... 27 7.4
AF024494-13|AAB70328.1| 398|Caenorhabditis elegans Nuclear horm... 27 7.4
Z81541-1|CAB04411.1| 1291|Caenorhabditis elegans Hypothetical pr... 27 9.8
>AC084158-23|AAP31422.1| 187|Caenorhabditis elegans Hypothetical
protein Y69A2AR.7c protein.
Length = 187
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +2
Query: 269 MKKKLQRIINDLMKLSLAMCSVQHLNHSTSTPSCPVRLTFTKPHFETLHS 418
++K QR+ +D+ + L +C +H+NH+ TP P + T FET S
Sbjct: 104 LQKMRQRVADDIGEKVLDIC--EHINHNHYTPKMPTK-TEIPEIFETKFS 150
>AC084158-22|AAM15623.1| 214|Caenorhabditis elegans Hypothetical
protein Y69A2AR.7b protein.
Length = 214
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +2
Query: 269 MKKKLQRIINDLMKLSLAMCSVQHLNHSTSTPSCPVRLTFTKPHFETLHS 418
++K QR+ +D+ + L +C +H+NH+ TP P + T FET S
Sbjct: 131 LQKMRQRVADDIGEKVLDIC--EHINHNHYTPKMPTK-TEIPEIFETKFS 177
>AC084158-21|AAK68581.1| 271|Caenorhabditis elegans Hypothetical
protein Y69A2AR.7a protein.
Length = 271
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +2
Query: 269 MKKKLQRIINDLMKLSLAMCSVQHLNHSTSTPSCPVRLTFTKPHFETLHS 418
++K QR+ +D+ + L +C +H+NH+ TP P + T FET S
Sbjct: 177 LQKMRQRVADDIGEKVLDIC--EHINHNHYTPKMPTK-TEIPEIFETKFS 223
>AF273836-1|AAG15184.1| 362|Caenorhabditis elegans nuclear receptor
NHR-92 protein.
Length = 362
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 214 RGNQFSCHTIRICLSVGTVRKSFQKCPRT 128
RG+++ C + CL V T+R +KC T
Sbjct: 43 RGHEYRCKQMENCLIVSTIRNMCKKCRYT 71
>AC024776-15|AAK68482.2| 354|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 92 protein.
Length = 354
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 214 RGNQFSCHTIRICLSVGTVRKSFQKCPRT 128
RG+++ C + CL V T+R +KC T
Sbjct: 35 RGHEYRCKQMENCLIVSTIRNMCKKCRYT 63
>Z81085-3|CAB03115.1| 769|Caenorhabditis elegans Hypothetical
protein F46F3.4 protein.
Length = 769
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 275 KKLQRIINDLMKLSLAMCSVQHLNHSTSTPSCPVRLTFTKPHFE 406
K+ Q+ ++L K++ H + STS+ P +TF+ P FE
Sbjct: 325 KENQQKYSELSKMASTDPHSNHSSPSTSSQKAPTLITFSPPSFE 368
>U58757-2|AAC47915.2| 402|Caenorhabditis elegans Hypothetical
protein C01B10.3 protein.
Length = 402
Score = 28.7 bits (61), Expect = 3.2
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = +1
Query: 94 NLHSVKNYEAIRFLDIFEKTFVQSLQKGKFESYGKKIDFHDEKAINFVGNYWQENADLYE 273
NL+ KN+ I++ D F T +++ G S G + D N G + D Y
Sbjct: 93 NLYLFKNHSDIQYYDRFSSTGYINVRSGHQHSIGS--NECDGFIQNTFGQNYTFRRDFYN 150
Query: 274 EEVTKDY--QRSYEIVAR 321
++ T+D QR+ ++AR
Sbjct: 151 DDGTRDLANQRTGFLLAR 168
>U80446-3|AAL77180.1| 889|Caenorhabditis elegans Nuclear pore
complex protein protein6, isoform b protein.
Length = 889
Score = 27.9 bits (59), Expect = 5.6
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +2
Query: 344 NHSTSTPSCPVRLTFTKPHFETLHSISYXT--GLWVTLTHSSIT 469
+HS STP P+R + T H + ++ISY T G V +T S T
Sbjct: 189 SHSLSTPGRPIRASVT--HHPSRNTISYCTAEGQLVIVTLGSYT 230
>U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore
complex protein protein6, isoform a protein.
Length = 1562
Score = 27.9 bits (59), Expect = 5.6
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +2
Query: 344 NHSTSTPSCPVRLTFTKPHFETLHSISYXT--GLWVTLTHSSIT 469
+HS STP P+R + T H + ++ISY T G V +T S T
Sbjct: 189 SHSLSTPGRPIRASVT--HHPSRNTISYCTAEGQLVIVTLGSYT 230
>U41554-3|AAA83298.2| 745|Caenorhabditis elegans Nematode astacin
protease protein38 protein.
Length = 745
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 211 HDEKAINFVGNYWQENADLYEEEV 282
HDE A+N Y+Q + DL E++V
Sbjct: 75 HDELAVNNADEYFQGDVDLSEQQV 98
>Z82278-9|CAE17877.1| 323|Caenorhabditis elegans Hypothetical
protein W04E12.9 protein.
Length = 323
Score = 27.5 bits (58), Expect = 7.4
Identities = 13/62 (20%), Positives = 28/62 (45%)
Frame = +1
Query: 37 YYPLMTSYYFPFAQRPDNYNLHSVKNYEAIRFLDIFEKTFVQSLQKGKFESYGKKIDFHD 216
Y P + S + F P ++NL+ + F+ T + + +K K E++ ++ H
Sbjct: 3 YLPSLPSLFLYFYDHPSSHNLYIYLHL----FVQSNTTTIISNFRKQKHENHSSEVSMHQ 58
Query: 217 EK 222
+
Sbjct: 59 HR 60
>Z82070-8|CAE17980.1| 323|Caenorhabditis elegans Hypothetical
protein W04E12.9 protein.
Length = 323
Score = 27.5 bits (58), Expect = 7.4
Identities = 13/62 (20%), Positives = 28/62 (45%)
Frame = +1
Query: 37 YYPLMTSYYFPFAQRPDNYNLHSVKNYEAIRFLDIFEKTFVQSLQKGKFESYGKKIDFHD 216
Y P + S + F P ++NL+ + F+ T + + +K K E++ ++ H
Sbjct: 3 YLPSLPSLFLYFYDHPSSHNLYIYLHL----FVQSNTTTIISNFRKQKHENHSSEVSMHQ 58
Query: 217 EK 222
+
Sbjct: 59 HR 60
>Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical protein
K12F2.1 protein.
Length = 1969
Score = 27.5 bits (58), Expect = 7.4
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +2
Query: 146 KRLSYSPYRKANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDL 304
KR+ N+ R ++ + +M+ L +ET K + +KKKL+ INDL
Sbjct: 1587 KRIQEKEEEFENTRRNHQRALESMQATLE-AETKQKEEALRIKKKLESDINDL 1638
>X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy chain 3
protein.
Length = 1969
Score = 27.5 bits (58), Expect = 7.4
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +2
Query: 146 KRLSYSPYRKANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDL 304
KR+ N+ R ++ + +M+ L +ET K + +KKKL+ INDL
Sbjct: 1587 KRIQEKEEEFENTRRNHQRALESMQATLE-AETKQKEEALRIKKKLESDINDL 1638
>AF024494-13|AAB70328.1| 398|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 260 protein.
Length = 398
Score = 27.5 bits (58), Expect = 7.4
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 11/85 (12%)
Frame = -3
Query: 543 D*FLNDNIIDLNADEMKFLLRIRLQVMLECVNVTHNPVI*L----IECRVSKCGLVKV-- 382
D F N+ ++N + MK ++ + E +N P L +EC K L+
Sbjct: 256 DYFFGLNVTNVNMESMKLKTQLHHNFVTEMINCLGTPFRRLQIDDVECAALKIILLLTPS 315
Query: 381 --KRT---GHEGVLVEWFRCCTEHM 322
KR G EGVL + CTE +
Sbjct: 316 CTKRAIYAGQEGVLAGLYTKCTEEL 340
>Z81541-1|CAB04411.1| 1291|Caenorhabditis elegans Hypothetical
protein F48F5.1 protein.
Length = 1291
Score = 27.1 bits (57), Expect = 9.8
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +2
Query: 185 NRMARKLISTMKRQLTLSETIG--KRTPICMKKKLQRIINDLMKLSLAMCSVQHLNHSTS 358
+++ + T K SET+ K+ P MKK ++ + +L K S ++ ++HS S
Sbjct: 498 DKLLESVQQTAKSVSQFSETLASVKKIPDAMKKNVKNVTLELNKRSESLNQSDAISHSAS 557
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,973,610
Number of Sequences: 27780
Number of extensions: 278548
Number of successful extensions: 818
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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