Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_N03
         (584 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40770.1 68415.m05030 SNF2 domain-containing protein / helica...    30   0.99 
At5g22540.1 68418.m02630 expressed protein contains Pfam profile...    29   1.7  
At4g11310.1 68417.m01827 cysteine proteinase, putative contains ...    29   1.7  
At2g45870.1 68415.m05705 expressed protein contains Pfam profile...    29   1.7  
At3g52970.1 68416.m05839 cytochrome P450 family protein cytochro...    28   4.0  
At5g15510.1 68418.m01816 expressed protein                             27   7.0  
At1g17460.1 68414.m02141 myb family transcription factor contain...    27   9.2  

>At2g40770.1 68415.m05030 SNF2 domain-containing protein / helicase
           domain-containing protein / zinc finger (C3HC4 type RING
           finger) family protein low similarity to SP|P36607 DNA
           repair protein rad8 {Schizosaccharomyces pombe};
           contains Pfam profiles PF00271: Helicase conserved
           C-terminal domain, PF00176: SNF2 family N-terminal
           domain, PF00628: PHD-finger, PF00097: Zinc finger, C3HC4
           type (RING finger)
          Length = 1648

 Score = 30.3 bits (65), Expect = 0.99
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +2

Query: 194 ARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSLAMCSVQ 337
           AR++I T+KR +          P+    +  +++N L+KL  A C  Q
Sbjct: 719 AREVIETLKRDILKRGHTSSDNPLVTHAEAAKLLNSLLKLRQACCHPQ 766


>At5g22540.1 68418.m02630 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 440

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 118 EAIRFLDIFEKTFVQSLQKGKFESYGKKIDFHDEKAINFV 237
           EA   LD+  KTFV    + + + +  K  F+D + + FV
Sbjct: 217 EAKHLLDLIRKTFVPVPSQRRIKDHSSKSSFNDHEYLGFV 256


>At4g11310.1 68417.m01827 cysteine proteinase, putative contains
           similarity to cysteine proteinase RD21A (thiol protease)
           GI:435619, SP:P43297 from [Arabidopsis thaliana]
          Length = 364

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 1/109 (0%)
 Frame = +1

Query: 85  DNYNLHSVKNYEAIRFLDIFEKTFVQSLQK-GKFESYGKKIDFHDEKAINFVGNYWQENA 261
           DN  LHSV + EA     IFE   V+  +  G      +++   ++  + F+ N   EN 
Sbjct: 33  DNNRLHSVFDAEASL---IFESWMVKHGKVYGSVAEKERRLTIFEDN-LRFINNRNAENL 88

Query: 262 DLYEEEVTKDYQRSYEIVARHVLGAAPKPFDKHTFMPSALDFYQTALRD 408
             Y   +T     S         GA P+P   H FM S+ D Y+T+  D
Sbjct: 89  S-YRLGLTGFADLSLHEYKEVCHGADPRPPRNHVFMTSS-DRYKTSADD 135


>At2g45870.1 68415.m05705 expressed protein contains Pfam profile
           PF05249: Uncharacterised protein family (UPF0187)
          Length = 410

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 24/77 (31%), Positives = 40/77 (51%)
 Frame = +2

Query: 173 KANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSLAMCSVQHLNHS 352
           K++ + ++ KLIS +K     S+ I +R  +  K+ L    N +   S    S++HL H 
Sbjct: 49  KSDDSPLSEKLISLLKAVPNWSDGIKERR-MQQKRSLYTHENWVRHRS----SLRHLRHV 103

Query: 353 TSTPSCPVRLTFTKPHF 403
           +S+PS  V L+   P F
Sbjct: 104 SSSPSSRVILSLIPPVF 120


>At3g52970.1 68416.m05839 cytochrome P450 family protein cytochrome
           P450 76A2, eggplant, PIR:S38534
          Length = 516

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
 Frame = +1

Query: 196 KKIDFHDEKAINFVGNYWQENADLYE----EEVTKDY 294
           +K  FH EKA    G + +E  ++ E    +E TKDY
Sbjct: 242 RKTQFHVEKAFEIAGEFIRERTEVREREKSDEKTKDY 278


>At5g15510.1 68418.m01816 expressed protein
          Length = 497

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
 Frame = +1

Query: 199 KIDFHDEKAINFVGNYWQENA---DLYEEEVTKDYQRSYEIVARHVLGAAPKPFDKHTFM 369
           + D+   + ++F+  Y  E      L EEE  +  ++  E+V +    A P P+    F+
Sbjct: 397 EFDYQVAEKMSFIEQYKMERERQQKLAEEEEIRRLRK--ELVPK----AQPMPYFDRPFI 450

Query: 370 PSALDFYQTALRDPAFY 420
           P     + TA RDP F+
Sbjct: 451 PRRSSKHPTAPRDPKFH 467


>At1g17460.1 68414.m02141 myb family transcription factor contains
           Pfam PF00249: Myb-like DNA-binding domain
          Length = 604

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +2

Query: 128 GSWTFLKRLSYSPY 169
           G WT +K+LS+SPY
Sbjct: 517 GKWTEIKKLSFSPY 530


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,100,011
Number of Sequences: 28952
Number of extensions: 248573
Number of successful extensions: 678
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)