Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_N02
         (547 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos...    25   5.5  
SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5 |Schizo...    25   5.5  
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po...    25   5.5  
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos...    25   5.5  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    25   7.3  
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    25   7.3  
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac...    25   9.6  
SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p...    25   9.6  

>SPBC409.12c |||nuclear telomere cap complex subunit
           Stn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 13/46 (28%), Positives = 27/46 (58%)
 Frame = +2

Query: 233 LWLELTMFDAIRYLLPLAALTFLSGHRLLRRLVQDKTQSR*TITLN 370
           +++ +T  D IR+++PL A   L  H+ ++ +V+D      T+ L+
Sbjct: 249 VYMLVTSKDIIRFVIPLMASGLLEAHK-VQSIVRDSNPMFITLPLS 293


>SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 411

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +3

Query: 336 IKRNRVKPLH*TVEFLHSTNSTILYTGLSFNISLSQIQYVFTLLNSTIN 482
           I    + PLH  +  LHST  T+ + G  F I       +F L   +IN
Sbjct: 104 IPSENLGPLHEAIVNLHSTYMTLYWLGEFFGIQAK----LFPLFQGSIN 148


>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 8/15 (53%), Positives = 14/15 (93%)
 Frame = +1

Query: 202 SGRLPRAVRDAVAGV 246
           SG++P +V+DA+AG+
Sbjct: 514 SGKMPSSVKDAIAGI 528


>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 375 EFLHSTNSTILYTGLSFNISLSQIQYVF 458
           +F  + NST+   GLS  +S  +++Y+F
Sbjct: 296 QFADTANSTVFVGGLSKFVSEEELKYLF 323


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 7/46 (15%)
 Frame = -2

Query: 324  RRSSRCPDR---NVSAASGSRYRIASNI---VNS-SHSIAYSPRQP 208
            R+S+   DR   N S+ SG    I+S+I   ++S  +S  YSPR+P
Sbjct: 1354 RKSASTSDRRFVNASSTSGMNMPISSSISAKISSIQNSTKYSPRKP 1399


>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 376 SSYIQQTAPYFTRVFLLIFPYLKFNMYS 459
           + YIQ + P F RV  L+   LK  ++S
Sbjct: 453 ADYIQDSGPLFKRVRFLLSESLKSGLFS 480


>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 853

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 357 PLH*TVEFLHSTNSTILYTGLS-FNISL 437
           P H  +E++ ST  T+LY   S F++SL
Sbjct: 123 PYHQDIEWITSTEGTVLYYDQSTFSLSL 150


>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 608

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -1

Query: 235 QHRVQPEAASQREMEDESVRCEGE 164
           +H  +P+  +   ++DE+  CEGE
Sbjct: 82  EHDEEPQTFADEFIDDEAKECEGE 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,867,213
Number of Sequences: 5004
Number of extensions: 32429
Number of successful extensions: 100
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)