Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_N02
(547 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1759 + 39689410-39689573,39689728-39689923,39690014-396901... 56 2e-08
07_01_0599 - 4457770-4458449,4458575-4458944 28 4.2
02_01_0448 + 3227721-3228968 28 4.2
11_04_0314 - 16277292-16277927,16278385-16278514,16278934-162792... 28 5.6
04_01_0422 + 5573833-5574647,5575577-5575692,5576922-5577130,557... 28 5.6
02_05_1120 + 34257504-34258294,34258483-34258571,34258616-342587... 28 5.6
08_01_0656 + 5652383-5653009,5653260-5653736,5654969-5655289,565... 27 7.4
03_05_1019 + 29736644-29736709,29737156-29737515,29737595-297377... 27 7.4
01_06_1075 + 34350155-34350709 27 9.8
>01_06_1759 +
39689410-39689573,39689728-39689923,39690014-39690103,
39690221-39690277,39690391-39690460,39690747-39690811,
39691408-39691462,39691704-39691831,39691919-39691950,
39692205-39692274,39692723-39692824,39692921-39693010,
39693084-39693232,39693620-39693731,39695332-39695412,
39695481-39695705,39695815-39695937,39696021-39696137
Length = 641
Score = 55.6 bits (128), Expect = 2e-08
Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 5/104 (4%)
Frame = +2
Query: 32 DIAHV-PFPGGAAPAFLSDVFACACAAPXXXXXXXWAKIGINFSNFPFTP----YALVFH 196
+I+H+ P P LS F P ++G+N NFP P +A +FH
Sbjct: 528 EISHIFRSPEKRPPKELSFAFTGLTLLPIVGFLIGLMRLGVNLKNFPSLPAPAAFASLFH 587
Query: 197 LSLGGCLGLYAMLWLELTMFDAIRYLLPLAALTFLSGHRLLRRL 328
+G L LY + W++L +F ++YL L GHR L L
Sbjct: 588 AGIGAVLLLYVLFWIKLDLFTTLKYLSFLGVFLVFVGHRALSYL 631
>07_01_0599 - 4457770-4458449,4458575-4458944
Length = 349
Score = 28.3 bits (60), Expect = 4.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 369 TVEFLHSTNSTILYTGLSFNISLSQIQ 449
T LH N T+ YTGL+ ++ L+Q++
Sbjct: 216 TKTILHDANGTVNYTGLAGHLMLAQLK 242
>02_01_0448 + 3227721-3228968
Length = 415
Score = 28.3 bits (60), Expect = 4.2
Identities = 19/70 (27%), Positives = 28/70 (40%)
Frame = -2
Query: 222 SPRQPPRERWKTRAYGVKGKLEKLMPIFAQXXXXXXSGAAHAHANTSERNAGAAPPGNGT 43
SP PP W+ + G++ + +P +A GA TS R A PP +
Sbjct: 13 SPCSPPASSWRDLPLDIAGEVLRRLPSYAD---RICFGATCRSWRTSAREHRAPPPLSPC 69
Query: 42 CAISPGSGPG 13
+ GS G
Sbjct: 70 LCFADGSFRG 79
>11_04_0314 -
16277292-16277927,16278385-16278514,16278934-16279217,
16279308-16279431,16280442-16280530,16280630-16280706,
16280790-16280922,16282131-16282211,16282372-16282539
Length = 573
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 393 NSTILYTGLSFNISLSQIQYVFTLLNST 476
NST +Y G+S+NI + ++ F +L T
Sbjct: 67 NSTRIYEGISYNIPIDELDSQFKVLTLT 94
>04_01_0422 + 5573833-5574647,5575577-5575692,5576922-5577130,
5579676-5579795,5581616-5581744,5581828-5581953,
5582945-5583000,5583084-5583183,5585155-5585272,
5585374-5585583,5585902-5586226,5587094-5587187,
5588021-5588129,5588246-5588514,5589153-5589280,
5589983-5590217,5590858-5591046,5591326-5591609,
5591698-5591890,5592040-5592207,5592429-5592514,
5594391-5594550
Length = 1412
Score = 27.9 bits (59), Expect = 5.6
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +2
Query: 179 YALVFHLSLGGCLGL-YAMLWLELTMFDAIRYLLPLAALT-FLSG 307
Y F L L C + YA W+ + F A+ + PLA L+ FL+G
Sbjct: 1258 YLFPFSLLLQNCRPIGYAYYWISVGAFLAVLLIPPLALLSPFLAG 1302
>02_05_1120 +
34257504-34258294,34258483-34258571,34258616-34258713,
34259269-34259292,34259314-34259404,34259761-34259813,
34259933-34260151
Length = 454
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 145 RHQLLQLPLHTVRSRLPSLSGRLPRAVRDAVAGVDNVRR 261
R +L+ P H R+P+ P + VA +D++RR
Sbjct: 64 RDRLMSTPSHLPSRRIPTAPPPRPSGNAEPVASIDDIRR 102
>08_01_0656 +
5652383-5653009,5653260-5653736,5654969-5655289,
5655434-5655589,5656062-5656127,5656196-5656315
Length = 588
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -2
Query: 318 SSRCPDRNVSAASGSRYRIASNIVNSSHSIAYSPRQPPRERWKTRA 181
S++CP R S +G+ R + + + S S R R RW+ A
Sbjct: 3 STKCPRRKPSRPAGAALRKTGSAPSPTRSCTTSCRSCGRGRWRAPA 48
>03_05_1019 +
29736644-29736709,29737156-29737515,29737595-29737735,
29737912-29738044,29738344-29738457,29738553-29738701,
29740815-29740907,29741019-29741079,29741180-29741512,
29742149-29742224,29742322-29742421,29743300-29743369,
29743987-29744082,29744355-29744402,29744427-29744658,
29745186-29745246,29745265-29745375
Length = 747
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -2
Query: 336 SCTSRRSSRCPDRNVSAASGSRYR-IASNIVNS 241
SCT S+R PDR + GS R +AS +V +
Sbjct: 486 SCTDVNSARAPDRMLGEVRGSNSRCMASTLVRT 518
>01_06_1075 + 34350155-34350709
Length = 184
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -2
Query: 69 GAAPPGNGTCAISPGSGPGAAS 4
GA PG G A SP +G AAS
Sbjct: 100 GAGEPGPGAAAASPDTGAAAAS 121
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,627,682
Number of Sequences: 37544
Number of extensions: 235338
Number of successful extensions: 897
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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