Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_N02
         (547 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58730| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.81 
SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)                  30   1.4  
SB_50935| Best HMM Match : TPR_2 (HMM E-Value=0.00065)                 28   4.3  
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.3  
SB_34555| Best HMM Match : EGF (HMM E-Value=7.00649e-45)               28   4.3  
SB_47879| Best HMM Match : ATP-synt_Eps (HMM E-Value=3.8)              28   5.7  
SB_4670| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.6  

>SB_58730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1014

 Score = 30.7 bits (66), Expect = 0.81
 Identities = 21/81 (25%), Positives = 38/81 (46%)
 Frame = -2

Query: 378 TPRFSVMV*RDCVLSCTSRRSSRCPDRNVSAASGSRYRIASNIVNSSHSIAYSPRQPPRE 199
           T R+S+ +     +S T+R S     R  S +  +RY I+ N+V +   +  S +   + 
Sbjct: 555 TARYSISLTARYSISLTARYSISLTAR-YSISLTARYSISLNVVTARKDLLASHKDAWKT 613

Query: 198 RWKTRAYGVKGKLEKLMPIFA 136
            W T    V+G L+    I++
Sbjct: 614 LWSTGRIDVEGDLQLSQAIYS 634


>SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)
          Length = 765

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 5/54 (9%)
 Frame = -2

Query: 327 SRRSSRCPDRNVSAASGSRYRIA-SNIVNSSHSIAYSPR----QPPRERWKTRA 181
           S + SR P R+ S  S  RYR + S+  + SHS + SPR    + PR+R ++++
Sbjct: 250 SPQKSRSPQRSRSPRSSKRYRSSRSHRKHRSHSRSRSPRSKRSRSPRKRRRSKS 303


>SB_50935| Best HMM Match : TPR_2 (HMM E-Value=0.00065)
          Length = 1033

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -2

Query: 264 IASNIVNSSHSIAYSPRQPPRERWKTRAYGVKGKLEKLMP 145
           + SN+ + SH    +P   P ER K + + V GK   + P
Sbjct: 533 LLSNLTSPSHERVITPMSDPWERQKQQCHVVLGKYFAMQP 572


>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4865

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -2

Query: 336  SCTSRRSSRCPDRNVSAASGSRYRIASNIVNSSHSIAYS 220
            S +SRRSS  P  + + ++ SRY+  S++  SS    YS
Sbjct: 2955 SSSSRRSSLTPRNDSNGSNTSRYQPGSHLSKSSSPRRYS 2993


>SB_34555| Best HMM Match : EGF (HMM E-Value=7.00649e-45)
          Length = 979

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +3

Query: 339 KRNRVKPLH*TVEFLHSTNSTILYTGLSFNISLSQIQYVFTLLNSTINV 485
           K N V P+H T+  L STN T L T     + L ++     +L  +I +
Sbjct: 146 KSNHVTPVHATMAELASTNQTTLATRARVLVGLLELNAKLEVLEFSIMI 194


>SB_47879| Best HMM Match : ATP-synt_Eps (HMM E-Value=3.8)
          Length = 267

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -2

Query: 330 TSRRSSRCPDRNVSAASGSRYRIASNIVNSSHSIAYSPRQPPRERWKTRA 181
           TS +SS  P+ N S A+ +  R +     +   + +SPR P ++  K  A
Sbjct: 102 TSDKSSDIPNPNFSKANSNEKRNSDQQFKNLPHVRFSPRSPLKKEVKAYA 151


>SB_4670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1012

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -2

Query: 363 VMV*RDCVL-SCTSRRSSRCPDRNVSAASGSRYRIASNIVNSSHSIAYS 220
           +++  DC   S T+RRSS CP    S +SGS     + ++NS   +A S
Sbjct: 434 ILLGNDCWRESYTARRSSACPPTRGSTSSGSG-AFGAPLINSLGVLASS 481


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,237,720
Number of Sequences: 59808
Number of extensions: 245489
Number of successful extensions: 735
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)