Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_N02
(547 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y00282-1|CAA68393.1| 631|Homo sapiens protein ( Human mRNA for ... 77 5e-14
CR456899-1|CAG33180.1| 631|Homo sapiens RPN2 protein. 77 5e-14
BC020222-1|AAH20222.1| 631|Homo sapiens ribophorin II protein. 77 5e-14
BC003560-1|AAH03560.1| 631|Homo sapiens ribophorin II protein. 77 5e-14
BC002380-1|AAH02380.2| 492|Homo sapiens RPN2 protein protein. 77 5e-14
AL031659-9|CAB41763.1| 631|Homo sapiens ribophorin II protein. 77 5e-14
AJ237734-1|CAB54801.1| 631|Homo sapiens ribophorin II protein. 77 5e-14
BC013028-1|AAH13028.2| 281|Homo sapiens RPN2 protein protein. 76 9e-14
AL031659-8|CAI42668.1| 615|Homo sapiens ribophorin II protein. 76 9e-14
AL031659-11|CAI42671.1| 138|Homo sapiens ribophorin II protein. 69 8e-12
AL031659-12|CAI42672.1| 146|Homo sapiens ribophorin II protein. 42 0.002
AB065537-1|BAC05783.1| 239|Homo sapiens seven transmembrane hel... 31 3.5
AY491401-1|AAR83719.1| 399|Homo sapiens brain leucine zipper pr... 29 8.0
>Y00282-1|CAA68393.1| 631|Homo sapiens protein ( Human mRNA for
ribophorin II. ).
Length = 631
Score = 76.6 bits (180), Expect = 5e-14
Identities = 34/97 (35%), Positives = 51/97 (52%)
Frame = +2
Query: 53 PGGAAPAFLSDVFACACAAPXXXXXXXWAKIGINFSNFPFTPYALVFHLSLGGCLGLYAM 232
P P +S+ F +P W +IG N SNF F P ++FHL LGL +
Sbjct: 533 PEKRPPTVVSNTFTALILSPLLLLFALWIRIGANVSNFTFAPSTIIFHLGHAAMLGLMYV 592
Query: 233 LWLELTMFDAIRYLLPLAALTFLSGHRLLRRLVQDKT 343
W +L MF ++YL L ++TFL+G+R+L + +T
Sbjct: 593 YWTQLNMFQTLKYLAILGSVTFLAGNRMLAQQAVKRT 629
>CR456899-1|CAG33180.1| 631|Homo sapiens RPN2 protein.
Length = 631
Score = 76.6 bits (180), Expect = 5e-14
Identities = 34/97 (35%), Positives = 51/97 (52%)
Frame = +2
Query: 53 PGGAAPAFLSDVFACACAAPXXXXXXXWAKIGINFSNFPFTPYALVFHLSLGGCLGLYAM 232
P P +S+ F +P W +IG N SNF F P ++FHL LGL +
Sbjct: 533 PEKRPPTVVSNTFTALILSPLLLLFALWIRIGANVSNFTFAPSTIIFHLGHAAMLGLMYV 592
Query: 233 LWLELTMFDAIRYLLPLAALTFLSGHRLLRRLVQDKT 343
W +L MF ++YL L ++TFL+G+R+L + +T
Sbjct: 593 YWTQLNMFQTLKYLAILGSVTFLAGNRMLAQQAVKRT 629
>BC020222-1|AAH20222.1| 631|Homo sapiens ribophorin II protein.
Length = 631
Score = 76.6 bits (180), Expect = 5e-14
Identities = 34/97 (35%), Positives = 51/97 (52%)
Frame = +2
Query: 53 PGGAAPAFLSDVFACACAAPXXXXXXXWAKIGINFSNFPFTPYALVFHLSLGGCLGLYAM 232
P P +S+ F +P W +IG N SNF F P ++FHL LGL +
Sbjct: 533 PEKRPPTVVSNTFTALILSPLLLLFALWIRIGANVSNFTFAPSTIIFHLGHAAMLGLMYV 592
Query: 233 LWLELTMFDAIRYLLPLAALTFLSGHRLLRRLVQDKT 343
W +L MF ++YL L ++TFL+G+R+L + +T
Sbjct: 593 YWTQLNMFQTLKYLAILGSVTFLAGNRMLAQQAVKRT 629
>BC003560-1|AAH03560.1| 631|Homo sapiens ribophorin II protein.
Length = 631
Score = 76.6 bits (180), Expect = 5e-14
Identities = 34/97 (35%), Positives = 51/97 (52%)
Frame = +2
Query: 53 PGGAAPAFLSDVFACACAAPXXXXXXXWAKIGINFSNFPFTPYALVFHLSLGGCLGLYAM 232
P P +S+ F +P W +IG N SNF F P ++FHL LGL +
Sbjct: 533 PEKRPPTVVSNTFTALILSPLLLLFALWIRIGANVSNFTFAPSTIIFHLGHAAMLGLMYV 592
Query: 233 LWLELTMFDAIRYLLPLAALTFLSGHRLLRRLVQDKT 343
W +L MF ++YL L ++TFL+G+R+L + +T
Sbjct: 593 YWTQLNMFQTLKYLAILGSVTFLAGNRMLAQQAVKRT 629
>BC002380-1|AAH02380.2| 492|Homo sapiens RPN2 protein protein.
Length = 492
Score = 76.6 bits (180), Expect = 5e-14
Identities = 34/97 (35%), Positives = 51/97 (52%)
Frame = +2
Query: 53 PGGAAPAFLSDVFACACAAPXXXXXXXWAKIGINFSNFPFTPYALVFHLSLGGCLGLYAM 232
P P +S+ F +P W +IG N SNF F P ++FHL LGL +
Sbjct: 394 PEKRPPTVVSNTFTALILSPLLLLFALWIRIGANVSNFTFAPSTIIFHLGHAAMLGLMYV 453
Query: 233 LWLELTMFDAIRYLLPLAALTFLSGHRLLRRLVQDKT 343
W +L MF ++YL L ++TFL+G+R+L + +T
Sbjct: 454 YWTQLNMFQTLKYLAILGSVTFLAGNRMLAQQAVKRT 490
>AL031659-9|CAB41763.1| 631|Homo sapiens ribophorin II protein.
Length = 631
Score = 76.6 bits (180), Expect = 5e-14
Identities = 34/97 (35%), Positives = 51/97 (52%)
Frame = +2
Query: 53 PGGAAPAFLSDVFACACAAPXXXXXXXWAKIGINFSNFPFTPYALVFHLSLGGCLGLYAM 232
P P +S+ F +P W +IG N SNF F P ++FHL LGL +
Sbjct: 533 PEKRPPTVVSNTFTALILSPLLLLFALWIRIGANVSNFTFAPSTIIFHLGHAAMLGLMYV 592
Query: 233 LWLELTMFDAIRYLLPLAALTFLSGHRLLRRLVQDKT 343
W +L MF ++YL L ++TFL+G+R+L + +T
Sbjct: 593 YWTQLNMFQTLKYLAILGSVTFLAGNRMLAQQAVKRT 629
>AJ237734-1|CAB54801.1| 631|Homo sapiens ribophorin II protein.
Length = 631
Score = 76.6 bits (180), Expect = 5e-14
Identities = 34/97 (35%), Positives = 51/97 (52%)
Frame = +2
Query: 53 PGGAAPAFLSDVFACACAAPXXXXXXXWAKIGINFSNFPFTPYALVFHLSLGGCLGLYAM 232
P P +S+ F +P W +IG N SNF F P ++FHL LGL +
Sbjct: 533 PEKRPPTVVSNTFTALILSPLLLLFALWIRIGANVSNFTFAPSTIIFHLGHAAMLGLMYV 592
Query: 233 LWLELTMFDAIRYLLPLAALTFLSGHRLLRRLVQDKT 343
W +L MF ++YL L ++TFL+G+R+L + +T
Sbjct: 593 YWTQLNMFQTLKYLAILGSVTFLAGNRMLAQQAVKRT 629
>BC013028-1|AAH13028.2| 281|Homo sapiens RPN2 protein protein.
Length = 281
Score = 75.8 bits (178), Expect = 9e-14
Identities = 34/97 (35%), Positives = 51/97 (52%)
Frame = +2
Query: 53 PGGAAPAFLSDVFACACAAPXXXXXXXWAKIGINFSNFPFTPYALVFHLSLGGCLGLYAM 232
P P +S+ F +P W +IG N SNF F P ++FHL LGL +
Sbjct: 183 PEKRPPTVVSNTFTALILSPLLLLFALWIRIGANVSNFIFAPSTIIFHLGHAAMLGLMYV 242
Query: 233 LWLELTMFDAIRYLLPLAALTFLSGHRLLRRLVQDKT 343
W +L MF ++YL L ++TFL+G+R+L + +T
Sbjct: 243 YWTQLNMFQTLKYLAILGSVTFLAGNRMLAQQAVKRT 279
>AL031659-8|CAI42668.1| 615|Homo sapiens ribophorin II protein.
Length = 615
Score = 75.8 bits (178), Expect = 9e-14
Identities = 33/89 (37%), Positives = 48/89 (53%)
Frame = +2
Query: 53 PGGAAPAFLSDVFACACAAPXXXXXXXWAKIGINFSNFPFTPYALVFHLSLGGCLGLYAM 232
P P +S+ F +P W +IG N SNF F P ++FHL LGL +
Sbjct: 501 PEKRPPTVVSNTFTALILSPLLLLFALWIRIGANVSNFTFAPSTIIFHLGHAAMLGLMYV 560
Query: 233 LWLELTMFDAIRYLLPLAALTFLSGHRLL 319
W +L MF ++YL L ++TFL+G+R+L
Sbjct: 561 YWTQLNMFQTLKYLAILGSVTFLAGNRML 589
>AL031659-11|CAI42671.1| 138|Homo sapiens ribophorin II protein.
Length = 138
Score = 69.3 bits (162), Expect = 8e-12
Identities = 29/70 (41%), Positives = 43/70 (61%)
Frame = +2
Query: 134 WAKIGINFSNFPFTPYALVFHLSLGGCLGLYAMLWLELTMFDAIRYLLPLAALTFLSGHR 313
W +IG N SNF F P ++FHL LGL + W +L MF ++YL L ++TFL+G+R
Sbjct: 67 WIRIGANVSNFTFAPSTIIFHLGHAAMLGLMYVYWTQLNMFQTLKYLAILGSVTFLAGNR 126
Query: 314 LLRRLVQDKT 343
+L + +T
Sbjct: 127 MLAQQAVKRT 136
>AL031659-12|CAI42672.1| 146|Homo sapiens ribophorin II protein.
Length = 146
Score = 41.5 bits (93), Expect = 0.002
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +2
Query: 53 PGGAAPAFLSDVFACACAAPXXXXXXXWAKIGINFSNFPFTPYALVFHL 199
P P +S+ F +P W +IG N SNF F P ++FHL
Sbjct: 57 PEKRPPTVVSNTFTALILSPLLLLFALWIRIGANVSNFTFAPSTIIFHL 105
>AB065537-1|BAC05783.1| 239|Homo sapiens seven transmembrane helix
receptor protein.
Length = 239
Score = 30.7 bits (66), Expect = 3.5
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +2
Query: 176 PYALVFHLSLGGCLGLYAMLWLELTMFDAIRYLLPLAAL 292
P +L+F L++G L +WLE ++ + YLL L +L
Sbjct: 34 PLSLLFLLAVGANTTLLMTIWLEASLHQPLYYLLSLLSL 72
>AY491401-1|AAR83719.1| 399|Homo sapiens brain leucine zipper
protein protein.
Length = 399
Score = 29.5 bits (63), Expect = 8.0
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = -2
Query: 321 RSSRCPDRNVSAASGSRYRIASNIVNSSHSIAYSPRQPPRERWKTRAYGVKG 166
+SS C R+ + A G R +++S S ++SP PR+R++ R G G
Sbjct: 301 QSSLCL-RDETLAGGQRRKLSSRFPVGRSSESFSPGDTPRQRFRQRHPGPLG 351
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,268,330
Number of Sequences: 237096
Number of extensions: 1262249
Number of successful extensions: 7516
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7481
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5364536570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -