Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_N02
         (547 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g21150.1 68417.m03057 ribophorin II (RPN2) family protein con...    51   6e-07
At1g52000.1 68414.m05866 jacalin lectin family protein similar t...    29   2.0  
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ...    29   2.0  
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ...    29   2.0  
At5g42620.1 68418.m05188 expressed protein                             28   4.7  
At4g35890.1 68417.m05097 La domain-containing protein contains P...    28   4.7  
At2g22590.1 68415.m02678 glycosyltransferase family protein cont...    27   8.2  
At1g47340.1 68414.m05241 F-box family protein contains F-box dom...    27   8.2  

>At4g21150.1 68417.m03057 ribophorin II (RPN2) family protein
           contains Pfam domain PF05817: Ribophorin II (RPN2)
          Length = 691

 Score = 50.8 bits (116), Expect = 6e-07
 Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 5/109 (4%)
 Frame = +2

Query: 17  GPDPGDIAHV-PFPGGAAPAFLSDVFACACAAPXXXXXXXWAKIGINFSNFPFTP----Y 181
           GP   +I+H+   P       LS VF      P         ++G+N  +FP +      
Sbjct: 574 GPK-AEISHIFRIPEKLPAKQLSLVFLGVIVLPFIGFLIGLTRLGVNIKSFPSSTGSAIS 632

Query: 182 ALVFHLSLGGCLGLYAMLWLELTMFDAIRYLLPLAALTFLSGHRLLRRL 328
           AL+FH  +G  L LY + WL+L +F  ++ L  L       GHR L +L
Sbjct: 633 ALLFHCGIGAVLLLYVLFWLKLDLFTTLKALSLLGVFLLFVGHRTLSQL 681


>At1g52000.1 68414.m05866 jacalin lectin family protein similar to
           myrosinase binding protein [Brassica napus] GI:1711296,
           myrosinase-binding protein homolog [Arabidopsis
           thaliana] GI:2997767; contains Pfam profile: PF01419
           jacalin-like lectin domain
          Length = 730

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 111 GAAHAHANTSERNAGAAPPGNGTCAISPGSGPG 13
           GA+      +E+NAG + P +G+   +PG+  G
Sbjct: 183 GASAVGNGETEKNAGGSKPSSGSAGTNPGASAG 215


>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
           (SR45) similar to arginine/serine-rich protein
           GI:6601502 from [Arabidopsis thaliana]
          Length = 407

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -2

Query: 336 SCTSRRSSRCPDRNVSAASGSRYRIASNIVNSSHSIAYSPRQPPR 202
           S +  RS   P R++S  S SR R  S+  + S S++   R PPR
Sbjct: 20  SSSRSRSGSSPSRSISR-SRSRSRSLSSSSSPSRSVSSGSRSPPR 63


>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
           (SR45) similar to arginine/serine-rich protein
           GI:6601502 from [Arabidopsis thaliana]
          Length = 414

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -2

Query: 336 SCTSRRSSRCPDRNVSAASGSRYRIASNIVNSSHSIAYSPRQPPR 202
           S +  RS   P R++S  S SR R  S+  + S S++   R PPR
Sbjct: 20  SSSRSRSGSSPSRSISR-SRSRSRSLSSSSSPSRSVSSGSRSPPR 63


>At5g42620.1 68418.m05188 expressed protein
          Length = 841

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -2

Query: 336 SCTSRRSSRCPDRNVSAASGSRYR-IASNIVNS 241
           SCT   S+R PDR +    GS  R +AS++V +
Sbjct: 501 SCTDINSARAPDRMLGEVRGSESRCMASSLVRT 533


>At4g35890.1 68417.m05097 La domain-containing protein contains Pfam
           PF05383: La domain
          Length = 523

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = -2

Query: 297 NVSAASGSRYRIASNIVNSSHSIAYSPRQPPRERWKTRAYGVKGKLEKL 151
           N +++S S  RI+ N  + + S+A SPR+P R+        V+G+ E +
Sbjct: 8   NPASSSMSPRRISGNHGSPTASVAQSPRRPSRQVSSPWTQIVRGESEPI 56


>At2g22590.1 68415.m02678 glycosyltransferase family protein
           contains Pfam profile: PF00201 UDP-glucoronosyl and
           UDP-glucosyl transferase
          Length = 470

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +2

Query: 248 TMFDAIRYLLPLAALTFLSGHRLLRRLVQDK 340
           T+ +AIR+  P+A L F+    L  R++++K
Sbjct: 372 TIIEAIRFAKPMAMLVFVYDQGLNARVIEEK 402


>At1g47340.1 68414.m05241 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 459

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
 Frame = +1

Query: 364 TKPWSSYIQQTAPYFTRVFL---------LIFPYLKFNMYSLF*TPQLMLPNLREMNETE 516
           +K W+S +  + P+F  +FL         L+F   K N +SLF  PQ + P  +  + + 
Sbjct: 61  SKQWASML--SCPHFRELFLTRSSSAQPRLLFAIEKHNQWSLFSLPQRLTPYEKSSSSSV 118

Query: 517 NCMYDFRMR 543
               +F M+
Sbjct: 119 VVTPEFHMK 127


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,837,726
Number of Sequences: 28952
Number of extensions: 172241
Number of successful extensions: 524
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)