Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_N01
         (624 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP26C9.02c |car1||arginase Car1 |Schizosaccharomyces pombe|chr...    29   0.41 
SPAC3H1.07 |||arginase |Schizosaccharomyces pombe|chr 1|||Manual       28   1.3  
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    28   1.3  
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha...    27   2.9  
SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22 |Schiz...    27   2.9  
SPBC1718.05 |trs31||TRAPP complex subunit Trs31 |Schizosaccharom...    26   5.1  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    25   6.7  
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    25   8.9  
SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces ...    25   8.9  

>SPBP26C9.02c |car1||arginase Car1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 323

 Score = 29.5 bits (63), Expect = 0.41
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +2

Query: 509 SVNAECKEFVDQYGPA-VIALLVQEIDPSKRLPSHRAF 619
           S+ A     VD+YG A V+ + ++ I+P +R P H +F
Sbjct: 209 SITAYTMHDVDKYGIARVVEMALEHINPGRRRPIHLSF 246


>SPAC3H1.07 |||arginase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 323

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 509 SVNAECKEFVDQYGPA-VIALLVQEIDPSKRLPSHRAF 619
           ++ A     VD+YG   V+ + ++ I+P KR P H +F
Sbjct: 209 NIAAYTMHHVDKYGIGRVVEMAMEHINPGKRRPVHLSF 246


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -3

Query: 169 VPGADTDHFANGGRFQIGHE-EVVYHR 92
           +PG  T HF NG +F+I  E E +Y++
Sbjct: 374 IPGMSTSHFENGLQFEIDDEMEPLYNQ 400


>SPCC1020.08 |||wybutosine biosynthesis protein
           Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 688

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +2

Query: 374 SVPQNKVVCSFCQYFLHYLQVELSDSRVEAKVTAAVNAACGVLPA 508
           +VP  + V  F +  + Y+ + L D  V  ++ A    +C +L A
Sbjct: 561 NVPYYEEVIDFVKKLIEYIDIHLQDLGVRYEIAAEHAHSCSILVA 605


>SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 526

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
 Frame = +2

Query: 8   EFYKVLQGLCKQTGEFKDECLHLAE----QYYPVIYNFLVADLKPAAI 139
           EF++ L  L K     KD C + AE      Y  +  F+  DLKP  I
Sbjct: 239 EFFRALHSLPKHILPEKDACFYAAEVTAALEYLHLMGFIYRDLKPENI 286


>SPBC1718.05 |trs31||TRAPP complex subunit Trs31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +2

Query: 317 EAEPEPGIVPALPIERMFVSVPQNKVVCSFCQYFLHYLQVELSDSRVEAKVTA 475
           EA  E  IV   P+   F+SVP+     + C Y    ++  L  ++   K +A
Sbjct: 127 EASDEYMIVDNNPLLNKFISVPKEMNQLNCCAYLAGIIEGFLDSAQFPCKASA 179


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
           Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 21  CCKVFASKPVNSKTN 65
           CC+VFA  P+  KTN
Sbjct: 503 CCQVFARDPICRKTN 517


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +2

Query: 554 AVIALLVQEIDPSKRLPSHRAFA 622
           AVIA ++ E+DP KR   HR FA
Sbjct: 589 AVIAHML-ELDPVKRYDIHRVFA 610


>SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 524

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 488 ACGVLPASVNAECKEFVDQYGPAVIA 565
           ACG   A+  A+  EF  Q+G  VIA
Sbjct: 344 ACGRPQATAIAQVAEFASQFGIGVIA 369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,285,677
Number of Sequences: 5004
Number of extensions: 42743
Number of successful extensions: 115
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)