Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_N01
(624 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0075 + 591537-591618,592410-592648,592840-593037,593129-59... 44 1e-04
12_01_0076 + 627796-627877,628706-628944,629129-629326,629415-62... 40 0.002
05_01_0273 + 2115257-2115589,2115706-2115766,2115876-2115970,211... 38 0.005
01_06_0158 - 27079262-27079346,27079662-27079750,27080540-270806... 37 0.015
05_07_0145 + 28012268-28012624,28012734-28012794,28013758-280138... 36 0.020
01_02_0039 - 10490522-10490606,10490674-10490810,10491107-104912... 34 0.11
01_01_0462 + 3422352-3422439,3423057-3423241,3423333-3423530,342... 34 0.11
01_06_1670 - 39007402-39008229,39008320-39008567,39009159-390093... 30 1.7
11_01_0422 + 3246528-3248606 29 3.0
12_01_0200 - 1483266-1483956,1484023-1484134,1484659-1484957,148... 28 6.9
11_06_0228 + 21497248-21498143,21499831-21501700,21501934-215020... 27 9.2
>11_01_0075 +
591537-591618,592410-592648,592840-593037,593129-593188,
593313-593456,594655-594819,595611-595709,596057-596125,
596216-596312,596922-597013,597085-597255,598053-598184,
598479-598559,599131-599247,599344-599433
Length = 611
Score = 44.0 bits (99), Expect = 1e-04
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = +2
Query: 20 VLQGLCKQTGEFKDECLHLAEQYYPVIYNFLVADLKPAAICKMIGIC 160
+L C QT F+ +CL + Y +++ +A++KPAA CK G+C
Sbjct: 93 ILHDTCSQTFSFEQKCLETMDSYATLVFA-KIAEIKPAAFCKQYGLC 138
>12_01_0076 +
627796-627877,628706-628944,629129-629326,629415-629474,
629596-629739,631700-631864,632636-632734,633114-633182,
633274-633370,633994-634085,635021-635152,635446-635526,
636284-636400,636497-636598
Length = 558
Score = 39.5 bits (88), Expect = 0.002
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +2
Query: 20 VLQGLCKQTGEFKDECLHLAEQYYPVIYNFLVADLKPAAICKMIGIC 160
+L C QT F+ +CL + Y +++ +A++KP CK G+C
Sbjct: 93 ILHDTCSQTFSFEQKCLETMDSYATLVF-AKIAEIKPDEFCKQYGLC 138
>05_01_0273 +
2115257-2115589,2115706-2115766,2115876-2115970,
2116072-2116184,2116278-2116551,2116923-2117036,
2117169-2117233,2117325-2117466,2117547-2117666,
2118153-2118241,2118349-2118433
Length = 496
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +2
Query: 467 VTAAVNAACGVLPASVNAECKEFVDQYGPAVIALLVQEIDPSK 595
+ A VN A G ++ ECKE V +YG ++ LL+ + DP K
Sbjct: 294 IVAQVNHAIGA-EGIISTECKEVVSEYGEMILNLLIAQTDPQK 335
Score = 34.7 bits (76), Expect = 0.060
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 47 GEFKDECLHLAEQYYPVIYNFLVADLKPAAICKMIGIC 160
G EC + +Y +I N L+A P +C +G+C
Sbjct: 306 GIISTECKEVVSEYGEMILNLLIAQTDPQKVCSQVGLC 343
>01_06_0158 -
27079262-27079346,27079662-27079750,27080540-27080659,
27080738-27080894,27081167-27081231,27081323-27081436,
27082109-27082178,27082412-27082642,27082963-27083039,
27083143-27083237,27084514-27084574,27084678-27085073
Length = 519
Score = 36.7 bits (81), Expect = 0.015
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 44 TGEFKDECLHLAEQYYPVIYNFLVADLKPAAICKMIGICAGNAT 175
TG EC + QY I + L A+ KPA +C +G+C + T
Sbjct: 323 TGVVSQECKAVVSQYGQQILDQLRAETKPAKVCSSVGLCTFDGT 366
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 512 VNAECKEFVDQYGPAVIALLVQEIDPSK 595
V+ ECK V QYG ++ L E P+K
Sbjct: 326 VSQECKAVVSQYGQQILDQLRAETKPAK 353
>05_07_0145 +
28012268-28012624,28012734-28012794,28013758-28013852,
28013944-28014056,28014436-28014604,28014677-28014716,
28014797-28014861,28015485-28015598,28015687-28015751,
28015927-28016083,28016167-28016286,28016447-28016535,
28016631-28016715
Length = 509
Score = 36.3 bits (80), Expect = 0.020
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 44 TGEFKDECLHLAEQYYPVIYNFLVADLKPAAICKMIGIC 160
TG EC + QY I + L+A+ +P+ IC +G+C
Sbjct: 313 TGVVSQECKTVVSQYGQQILDLLLAETQPSKICSQVGLC 351
Score = 33.1 bits (72), Expect = 0.18
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +2
Query: 512 VNAECKEFVDQYGPAVIALLVQEIDPSK 595
V+ ECK V QYG ++ LL+ E PSK
Sbjct: 316 VSQECKTVVSQYGQQILDLLLAETQPSK 343
>01_02_0039 -
10490522-10490606,10490674-10490810,10491107-10491248,
10491355-10491419,10491528-10491641,10491846-10492119,
10492215-10492327,10492405-10492499,10492602-10492662,
10492774-10493103
Length = 471
Score = 33.9 bits (74), Expect = 0.11
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 62 ECLHLAEQYYPVIYNFLVADLKPAAICKMIGICAGNAT 175
EC + Y +I L+A P +C IG+CA + T
Sbjct: 310 ECKQVVRDYGDMILEMLIAQASPMKLCSQIGLCAFDGT 347
Score = 31.9 bits (69), Expect = 0.43
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 467 VTAAVNAACGVLPASVNAECKEFVDQYGPAVIALLVQEIDPSK 595
+ A +N A G V+ ECK+ V YG ++ +L+ + P K
Sbjct: 293 IVAQINHAIGA-EGIVSMECKQVVRDYGDMILEMLIAQASPMK 334
>01_01_0462 +
3422352-3422439,3423057-3423241,3423333-3423530,
3423617-3423676,3424022-3424171
Length = 226
Score = 33.9 bits (74), Expect = 0.11
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = +2
Query: 2 ELEFYKVLQGLCKQTGEFKDECLHLAEQYYPVIYNFLVADLKPAAICKMIGIC 160
+ E +L C G K +C+ L + Y P+ + V+ + P C+ + +C
Sbjct: 71 QTEILSILHHACANVGPLKQQCITLVDYYIPLFF-LEVSMVTPEKFCESVHLC 122
>01_06_1670 - 39007402-39008229,39008320-39008567,39009159-39009364,
39009454-39011054
Length = 960
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +2
Query: 8 EFYKVLQGLCKQTGEFKDECLHLAEQYYPVIYNFLVADLKPAAICKMIGI 157
+F VL +CK+ G D + + +++PV N ++ L P GI
Sbjct: 898 DFLSVLDQVCKEVGRINDRTIASSVRHFPVPVNPMMPQLFPRIHALRAGI 947
>11_01_0422 + 3246528-3248606
Length = 692
Score = 29.1 bits (62), Expect = 3.0
Identities = 18/78 (23%), Positives = 30/78 (38%)
Frame = -1
Query: 519 AFTLAGNTPHXXXXXXXXXASTLESLSSTCR*CRKYWQNEQTTLFCGTETNIRSMGSAGT 340
AF A +T L + + R +FC E++IR+
Sbjct: 391 AFIAACSTTDAAADEPDTTTDALTDIKTELASVRSRLGESAAAIFCDLESSIRADAGKQP 450
Query: 339 IPGSGSASPITRTFVCFL 286
+PG G+ P+TR + +L
Sbjct: 451 VPG-GAVHPLTRYLMNYL 467
>12_01_0200 -
1483266-1483956,1484023-1484134,1484659-1484957,
1485203-1485265,1485721-1486010
Length = 484
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -3
Query: 262 GFLSSDQFGRWCDGFDDEFLGQERRHRYVGCV 167
G L+ FGR DGFDD+ L +R R CV
Sbjct: 276 GSLAHKLFGR--DGFDDDVLDWNQRFRIALCV 305
>11_06_0228 +
21497248-21498143,21499831-21501700,21501934-21502038,
21502139-21502232,21502335-21502363
Length = 997
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +2
Query: 500 LPASVNAECKEFVDQYGPAVIALLVQEIDPSKRLPSHR 613
LPA VN+ C ++ + V+A+ +++D R+P+ R
Sbjct: 790 LPAWVNSMCVPYLSELRLDVVAMEARDLDMLARMPALR 827
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,014,778
Number of Sequences: 37544
Number of extensions: 319419
Number of successful extensions: 937
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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