Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_N01
         (624 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49734| Best HMM Match : SapB_2 (HMM E-Value=0)                      60   1e-09
SB_32909| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.015
SB_10103| Best HMM Match : SapB_2 (HMM E-Value=2.6e-12)                36   0.027
SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)                   36   0.035
SB_52221| Best HMM Match : SapB_2 (HMM E-Value=0.00013)                33   0.14 
SB_15989| Best HMM Match : SapB_2 (HMM E-Value=0.00013)                33   0.14 
SB_47698| Best HMM Match : SapB_2 (HMM E-Value=1.5e-06)                32   0.43 
SB_20641| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_45874| Best HMM Match : TIR (HMM E-Value=0.43)                      29   3.1  
SB_26017| Best HMM Match : Extensin_2 (HMM E-Value=0.11)               29   4.1  
SB_59660| Best HMM Match : Mlp (HMM E-Value=0.35)                      28   5.4  
SB_29074| Best HMM Match : Kazal_2 (HMM E-Value=3.3e-16)               28   5.4  
SB_38016| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_59658| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_27570| Best HMM Match : DNA_ligase_A_C (HMM E-Value=2.3)            28   7.1  
SB_3866| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.4  

>SB_49734| Best HMM Match : SapB_2 (HMM E-Value=0)
          Length = 457

 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 22/64 (34%), Positives = 40/64 (62%)
 Frame = +2

Query: 398 CSFCQYFLHYLQVELSDSRVEAKVTAAVNAACGVLPASVNAECKEFVDQYGPAVIALLVQ 577
           C  C++ +  L   LS +  + ++  AV   C +LP+++ ++C +FV +YGPA+I +L Q
Sbjct: 219 CVLCEFVMKELDDMLSKNSTQQEIIQAVEKVCSILPSTIKSKCDQFVQEYGPALIEILEQ 278

Query: 578 EIDP 589
           E+ P
Sbjct: 279 EVSP 282



 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 16/65 (24%), Positives = 33/65 (50%)
 Frame = +2

Query: 398 CSFCQYFLHYLQVELSDSRVEAKVTAAVNAACGVLPASVNAECKEFVDQYGPAVIALLVQ 577
           C  C   + YL+  L+++  + ++   +   C  LP+ + +EC   V +YG  V+  ++ 
Sbjct: 315 CEICTTVMTYLKAFLNNNATDEEIVNFLEKVCNYLPSQIASECNAIVSEYGSTVLQ-IIA 373

Query: 578 EIDPS 592
             DP+
Sbjct: 374 NTDPT 378



 Score = 37.1 bits (82), Expect = 0.012
 Identities = 16/62 (25%), Positives = 32/62 (51%)
 Frame = +2

Query: 398 CSFCQYFLHYLQVELSDSRVEAKVTAAVNAACGVLPASVNAECKEFVDQYGPAVIALLVQ 577
           C+ C+  +  +    SD   + ++ + +  AC  L    + ECK  V+ YG A+I L++ 
Sbjct: 25  CTTCKELVKTIYTMASDPTAQNQILSLIKDACTFLGPEAS-ECKSLVETYGKAIIQLILS 83

Query: 578 EI 583
           ++
Sbjct: 84  QL 85



 Score = 32.3 bits (70), Expect = 0.33
 Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = +2

Query: 8   EFYKVLQGLCKQT-GEFKDECLHLAEQYYPVIYNFLVADLKPAAICKMIGICAGNATDVP 184
           E    L+ +C     +   EC  +  +Y   +   ++A+  P  +CK IG+C+ N   V 
Sbjct: 337 EIVNFLEKVCNYLPSQIASECNAIVSEYGSTVLQ-IIANTDPTTLCKEIGLCSAN-QHVM 394

Query: 185 VSPLLPKELI 214
            + +L K ++
Sbjct: 395 KAKILSKHIL 404


>SB_32909| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1411

 Score = 36.7 bits (81), Expect = 0.015
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +2

Query: 20  VLQGLCKQTGEFKDECLHLAEQYYPVIYNFLVADLKPAAICKMIGIC-AGNAT 175
           V++ L K   E   +C    ++Y P I   L  + KP  +C+ + +C AG AT
Sbjct: 611 VMRELSKMLNENSTKCKTFVQEYTPFIIEILSKEFKPELVCRELKLCSAGGAT 663



 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 515 NAECKEFVDQYGPAVIALLVQEIDP 589
           + +CK FV +Y P +I +L +E  P
Sbjct: 623 STKCKTFVQEYTPFIIEILSKEFKP 647


>SB_10103| Best HMM Match : SapB_2 (HMM E-Value=2.6e-12)
          Length = 105

 Score = 35.9 bits (79), Expect = 0.027
 Identities = 15/62 (24%), Positives = 32/62 (51%)
 Frame = +2

Query: 398 CSFCQYFLHYLQVELSDSRVEAKVTAAVNAACGVLPASVNAECKEFVDQYGPAVIALLVQ 577
           C+ C+  +  +    SD   + ++ + +  AC  L    + EC+  V+ YG A+I L++ 
Sbjct: 13  CTTCKELVKTIYTMASDPTAQNQILSLIKDACTFLGPEAS-ECRSLVETYGKAIIQLILS 71

Query: 578 EI 583
           ++
Sbjct: 72  QL 73


>SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)
          Length = 492

 Score = 35.5 bits (78), Expect = 0.035
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = +2

Query: 386 NKVVCSFCQYFLHYLQVELSDSRVEAKVTAAVNAACGVLPASVNAECKEFVDQYGPAVIA 565
           N+  C+ C+  +  ++  L D  +E KV A ++  C         ECK+ VD Y   +I+
Sbjct: 393 NQDTCAICEAVVGKVKDALDDKSMEGKVKAILDEICDKDGGFFAGECKKVVDTYFTMIIS 452

Query: 566 LL 571
            L
Sbjct: 453 QL 454


>SB_52221| Best HMM Match : SapB_2 (HMM E-Value=0.00013)
          Length = 290

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +2

Query: 11  FYKVLQGLCK--QTGEFKDECLHLAEQYYPVIYNFLVADLKPAAICKMIGIC 160
           F K    LCK   T  +++ CL L + Y P I + +  D+    IC  I +C
Sbjct: 60  FVKSFDRLCKLLPTKIYQNACLSLGKYYIPKIIDIITDDVTADVICHAIDLC 111


>SB_15989| Best HMM Match : SapB_2 (HMM E-Value=0.00013)
          Length = 524

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +2

Query: 11  FYKVLQGLCK--QTGEFKDECLHLAEQYYPVIYNFLVADLKPAAICKMIGIC 160
           F K    LCK   T  +++ CL L + Y P I + +  D+    IC  I +C
Sbjct: 60  FVKSFDRLCKLLPTKIYQNACLSLGKYYIPKIIDIITDDVTADVICHAIDLC 111


>SB_47698| Best HMM Match : SapB_2 (HMM E-Value=1.5e-06)
          Length = 175

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +2

Query: 8   EFYKVLQGLCKQT-GEFKDECLHLAEQYYPVIYNFLVADLKPAAICKMIGICAGN 169
           E    L+ +C     +   EC  +  +Y   +   ++A+  P  +CK IG+C+ N
Sbjct: 2   EIVNFLEKVCNYLPSQIASECNAIVSEYGSTVLQ-IIANTDPTTLCKEIGLCSAN 55



 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 491 CGVLPASVNAECKEFVDQYGPAVIALLVQEIDPS 592
           C  LP+ + +EC   V +YG  V+  ++   DP+
Sbjct: 11  CNYLPSQIASECNAIVSEYGSTVLQ-IIANTDPT 43


>SB_20641| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 353

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 19/60 (31%), Positives = 27/60 (45%)
 Frame = -3

Query: 328 GFRFTDHADIRLLLSDGHTCYLGFLSSDQFGRWCDGFDDEFLGQERRHRYVGCVPGADTD 149
           GF F        ++  G   Y G+ S D    + D  DD+ +G +    YVG V G D+D
Sbjct: 69  GFDFLSRISDDDVVIIGDDNYFGYGSDDDSSVFADDSDDDGVGDD--SGYVGVVFGEDSD 126


>SB_45874| Best HMM Match : TIR (HMM E-Value=0.43)
          Length = 876

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +2

Query: 413 YFLHYLQVELSDSRVEAKVTAAVNAACGVLPASVNAECKEFVDQY-GPAVIALLVQE 580
           + L  L   +SDSR +    AA   ACG+   + N + K  + ++ G ++++ LV+E
Sbjct: 567 FLLRMLSSAISDSRRQHLGFAAWEIACGIGRVASNDKNKRLIGRHDGVSILSTLVKE 623


>SB_26017| Best HMM Match : Extensin_2 (HMM E-Value=0.11)
          Length = 1704

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = -3

Query: 541  IDELLAFRVHTRRQHATRRVHGCSNFCLDSRVAEFNLQVVQEVLAERADHLVLW 380
            +  LLA R+  ++QH T     CS + LDS  A   + +       RA HL L+
Sbjct: 1487 VQALLAMRMRDQQQHKTSESSSCSAY-LDSN-AVHRMVLSSSPYQHRASHLSLY 1538


>SB_59660| Best HMM Match : Mlp (HMM E-Value=0.35)
          Length = 684

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/34 (47%), Positives = 22/34 (64%)
 Frame = -3

Query: 466 FCLDSRVAEFNLQVVQEVLAERADHLVLWDRDEH 365
           FCL S +  FN+ VVQ   +E+ DHL L + D+H
Sbjct: 455 FCL-SLLLLFNITVVQG--SEKEDHLTLPESDQH 485


>SB_29074| Best HMM Match : Kazal_2 (HMM E-Value=3.3e-16)
          Length = 711

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/34 (47%), Positives = 22/34 (64%)
 Frame = -3

Query: 466 FCLDSRVAEFNLQVVQEVLAERADHLVLWDRDEH 365
           FCL S +  FN+ VVQ   +E+ DHL L + D+H
Sbjct: 74  FCL-SLLLLFNITVVQG--SEKEDHLTLPESDQH 104


>SB_38016| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 215

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 159 QIPIILQMAAGFRSATRKLYITG*YCSAKCRHSSLNSPVCLQR 31
           Q+  ++       S TR  ++ G    + CRH+SL   V LQR
Sbjct: 98  QVRTLIAHTYSTTSTTRTRFVVGDPLESTCRHASLALAVVLQR 140


>SB_59658| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 237

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
 Frame = +2

Query: 368 FVSVPQNKV-VCSFCQYFLHYLQVELSDSRVEAKVTAAVNAACGV---LPASVNAECKEF 535
           ++ +P   V V    Q+F+  LQ + S  RV  +    V+ + G    LP+SV A    F
Sbjct: 24  YLEIPVKSVPVDGIDQWFI--LQSKSSKCRVSGECRVKVSLSSGKRPDLPSSVRAIYPNF 81

Query: 536 VDQYGPAVIALLVQEIDPSKRLPSH 610
            D YG  +   +  +++ +K + SH
Sbjct: 82  SDIYGAVLHEFIAYDLNRAKEV-SH 105


>SB_27570| Best HMM Match : DNA_ligase_A_C (HMM E-Value=2.3)
          Length = 270

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -3

Query: 328 GFRFTDHADIRLLLSDGHTCYLGFLSSDQ 242
           GF FT   DI+ L+SD +T    F+SS Q
Sbjct: 159 GFVFTKQEDIKNLISDNYTTIPLFMSSVQ 187


>SB_3866| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1178

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 544 LIDELLAFRVHTRRQHATRRVHGCSNFC 461
           ++ E+L  R +TRR H  + V GC + C
Sbjct: 816 ILPEILG-RWYTRRSHLLKAVEGCKSLC 842


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,275,679
Number of Sequences: 59808
Number of extensions: 362132
Number of successful extensions: 1272
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1272
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)