Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_N01
         (624 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016682-3|AAB66186.2|  308|Caenorhabditis elegans Hypothetical ...    30   1.2  
U53147-3|AAM29659.1|  550|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U53147-2|AAA96114.2|  935|Caenorhabditis elegans Hypothetical pr...    28   6.2  

>AF016682-3|AAB66186.2|  308|Caenorhabditis elegans Hypothetical
           protein T07D3.6 protein.
          Length = 308

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +2

Query: 491 CGVLPASVNAECKEFVDQYGPAVIALLVQEIDPSK-RLPSH 610
           C ++P + + +   FV+ Y P+ + LL +  +PS  RL  H
Sbjct: 252 CSIIPHTTDMDLMVFVEDYNPSYVELLQRPRNPSSFRLSRH 292


>U53147-3|AAM29659.1|  550|Caenorhabditis elegans Hypothetical
           protein C01B7.1b protein.
          Length = 550

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 23/77 (29%), Positives = 34/77 (44%)
 Frame = -1

Query: 408 QNEQTTLFCGTETNIRSMGSAGTIPGSGSASPITRTFVCFLXXXXXXXXXXXAPISLEDG 229
           +N+  TLF   + NI S  +  T+ G G+    T+     +            PIS+ D 
Sbjct: 326 ENDHPTLFSVDDLNIDSTSTLATLFGGGARK--TKYDDGEMPHDEDPLLDSLNPISVLDN 383

Query: 228 VMALMMSSLGRSGDTGT 178
           V AL  S+  RS +T T
Sbjct: 384 VAALFGSTPDRSVETET 400


>U53147-2|AAA96114.2|  935|Caenorhabditis elegans Hypothetical
           protein C01B7.1a protein.
          Length = 935

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 23/77 (29%), Positives = 34/77 (44%)
 Frame = -1

Query: 408 QNEQTTLFCGTETNIRSMGSAGTIPGSGSASPITRTFVCFLXXXXXXXXXXXAPISLEDG 229
           +N+  TLF   + NI S  +  T+ G G+    T+     +            PIS+ D 
Sbjct: 326 ENDHPTLFSVDDLNIDSTSTLATLFGGGARK--TKYDDGEMPHDEDPLLDSLNPISVLDN 383

Query: 228 VMALMMSSLGRSGDTGT 178
           V AL  S+  RS +T T
Sbjct: 384 VAALFGSTPDRSVETET 400


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,064,052
Number of Sequences: 27780
Number of extensions: 256732
Number of successful extensions: 727
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)