Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_M24
(350 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0216 + 15804110-15804284,15804341-15804351 30 0.59
06_03_0795 - 24683023-24683155,24685853-24686057,24686275-246864... 30 0.59
03_05_0517 - 25118232-25118730,25119002-25119273 28 1.8
03_02_0269 + 7001891-7002212,7003598-7004037 28 1.8
11_04_0321 - 16359390-16359539,16359674-16359746,16360448-163608... 27 3.1
09_02_0511 - 10079180-10079355,10079656-10079722,10080144-100801... 27 5.5
07_03_0202 + 15131001-15131047,15131488-15131754,15131913-151319... 27 5.5
03_02_0260 - 6924532-6924757,6925443-6925546,6925729-6926007,692... 27 5.5
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 27 5.5
12_01_0014 + 105422-105520,105598-105725,105939-106101,106198-10... 26 7.2
07_01_0601 + 4464745-4465010,4465274-4466582 26 7.2
03_02_0259 - 6920472-6920579,6920744-6921022,6921115-6921390,692... 26 7.2
02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704 26 7.2
02_01_0138 + 999809-999821,1000456-1001341,1001424-1003221,10037... 26 7.2
12_02_0219 + 15822050-15824896 26 9.6
12_01_1022 - 10435409-10435564,10435950-10436219,10436820-104371... 26 9.6
04_01_0072 - 784922-785567,785673-786406 26 9.6
03_05_0142 - 21217375-21217518,21217851-21217899,21218191-212182... 26 9.6
>12_02_0216 + 15804110-15804284,15804341-15804351
Length = 61
Score = 29.9 bits (64), Expect = 0.59
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +1
Query: 97 SGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAF 219
SG P+ +H V FF+ SN SGNY + G F
Sbjct: 12 SGSPAPPYKNHTVAGADGWFFNATSNTTSGNYSDWAAGETF 52
>06_03_0795 -
24683023-24683155,24685853-24686057,24686275-24686443,
24686590-24686775,24686916-24687124,24687197-24687362
Length = 355
Score = 29.9 bits (64), Expect = 0.59
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 124 HYCRPMEHHYCPPRELCLRQPW 59
HYCR +E+ YC + L R+ W
Sbjct: 181 HYCRSIENWYCLSKTLAEREAW 202
>03_05_0517 - 25118232-25118730,25119002-25119273
Length = 256
Score = 28.3 bits (60), Expect = 1.8
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = +1
Query: 148 DPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRY 258
D FF++ P GN T P VD P P + +
Sbjct: 37 DWFFTRKGESPQGNISKEETAPTGVDVTDPGRPGRAF 73
>03_02_0269 + 7001891-7002212,7003598-7004037
Length = 253
Score = 28.3 bits (60), Expect = 1.8
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -2
Query: 283 SHHGREGCRIAWVDNWDD*NRR 218
+ H R+ R+AW D W D +R+
Sbjct: 62 TEHARQRMRVAWADGWVDGSRK 83
>11_04_0321 -
16359390-16359539,16359674-16359746,16360448-16360845,
16360919-16362673,16362751-16362861,16363745-16363962,
16364088-16364196
Length = 937
Score = 27.5 bits (58), Expect = 3.1
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 241 YPPKRYDNPLARGGK 285
YPPKRY NP+ G+
Sbjct: 859 YPPKRYSNPVGPAGR 873
>09_02_0511 -
10079180-10079355,10079656-10079722,10080144-10080181,
10080255-10080336
Length = 120
Score = 26.6 bits (56), Expect = 5.5
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 85 VVDNSGVPSDGNSDHVVIANPDPFFSQPSNG 177
+++N+G S GN ++ N PFF SNG
Sbjct: 57 ILNNAGATSKGNYALILPVNEFPFFLVYSNG 87
>07_03_0202 +
15131001-15131047,15131488-15131754,15131913-15131940,
15132120-15132179,15132570-15132696,15132907-15133724
Length = 448
Score = 26.6 bits (56), Expect = 5.5
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Frame = +1
Query: 73 NRVHVVDNSGVPSDGNSDHVVIANPDPFFSQPSNGP----SGNYEPISTGPAFVDFN 231
NR+HV+D + V I+ PDP +P + P S P + +F +FN
Sbjct: 19 NRLHVLDPPCPSPVAAGEKVSISAPDPISHKPVSRPKVPVSDGNAPNAISKSFFNFN 75
>03_02_0260 -
6924532-6924757,6925443-6925546,6925729-6926007,
6926093-6926368,6926460-6926678,6926758-6926926,
6927208-6927382,6927489-6927600,6929566-6929820
Length = 604
Score = 26.6 bits (56), Expect = 5.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 85 VVDNSGVPSDGNSDHVVIANPDPFFSQP 168
V++N +P N HVV+ANP P P
Sbjct: 248 VLENCQLPH-ANHGHVVLANPSPILFYP 274
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 26.6 bits (56), Expect = 5.5
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +1
Query: 97 SGVPSD-GNSDHVVIANPDPFF-SQPSNGPSGNYEPIST 207
SG PS GN+ + ++P PF S PS+G SGNY + T
Sbjct: 464 SGSPSHRGNAG--MKSSPSPFAPSGPSSGGSGNYGRLPT 500
>12_01_0014 +
105422-105520,105598-105725,105939-106101,106198-106310,
106787-106825,107026-107109,107193-107241,107331-107422,
107680-107809,107906-107982,108058-109676,110024-110221,
110287-110825
Length = 1109
Score = 26.2 bits (55), Expect = 7.2
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Frame = +1
Query: 151 PFFSQPSNGPSG------NYEPISTGPAFVDFNHPNYPP 249
P FS P+ P+G ++E ++ P F N PN PP
Sbjct: 875 PGFSAPARVPTGFSSGFSSHEGLNPPPGFSSHNGPNPPP 913
>07_01_0601 + 4464745-4465010,4465274-4466582
Length = 524
Score = 26.2 bits (55), Expect = 7.2
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 121 SDHVVIANPDPFFSQPSNGPSGNYEPISTGPA 216
SDH V+ P PF P++ + + PI T PA
Sbjct: 50 SDHFVLT-PPPFQITPTSIQNSTWLPIPTSPA 80
>03_02_0259 -
6920472-6920579,6920744-6921022,6921115-6921390,
6921473-6921691,6921795-6921963,6922248-6922422,
6922490-6922601,6923343-6923573
Length = 522
Score = 26.2 bits (55), Expect = 7.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 85 VVDNSGVPSDGNSDHVVIANPDPFFSQP 168
V++N +P N HV++ANP P P
Sbjct: 240 VLENCQLPHP-NHGHVILANPSPILCYP 266
>02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704
Length = 748
Score = 26.2 bits (55), Expect = 7.2
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -3
Query: 279 TTGERVVVSLGWIIGMIEIDERRSSAYGFIISAR 178
+TG +V + L W++G E R +A G++ +R
Sbjct: 233 STGGKVPLVLDWVVGKKTCREARRNATGYMCVSR 266
>02_01_0138 +
999809-999821,1000456-1001341,1001424-1003221,
1003716-1003805,1004034-1004111,1004513-1004518,
1004849-1004958,1005174-1005369
Length = 1058
Score = 26.2 bits (55), Expect = 7.2
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -3
Query: 120 IAVRWNTTIVHHVNSV 73
IA RW T ++HHVNS+
Sbjct: 507 IAGRWLTQMLHHVNSL 522
>12_02_0219 + 15822050-15824896
Length = 948
Score = 25.8 bits (54), Expect = 9.6
Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +2
Query: 8 DTIRQ*KLSC-FSSSPYWPWLPQTEFTWWTIVV 103
D +R+ ++ C F+ P WPWL ++ T+V+
Sbjct: 272 DPLRKHEMHCRFTQGPPWPWLAVAS-SYGTLVI 303
>12_01_1022 -
10435409-10435564,10435950-10436219,10436820-10437125,
10437932-10438057,10439825-10439893,10440443-10440487,
10440717-10440776,10441527-10441589,10442186-10442266,
10442494-10442916
Length = 532
Score = 25.8 bits (54), Expect = 9.6
Identities = 17/45 (37%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = +1
Query: 118 NSDHVVIANPDPFFSQPSNGPSGNYEPIS-TGPAFVDFNHPNYPP 249
N HV P P +S P G Y P G V N P YPP
Sbjct: 357 NEHHVPFIAPSPSYSAGMLPPQGMYPPPEWNGYHQVPLN-PYYPP 400
>04_01_0072 - 784922-785567,785673-786406
Length = 459
Score = 25.8 bits (54), Expect = 9.6
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = +1
Query: 154 FFSQPSNGP--SGNYEPISTGPAFVD 225
FFS+PS GP SGN++ + +D
Sbjct: 66 FFSRPSKGPTVSGNFDYLPCSSCIID 91
>03_05_0142 -
21217375-21217518,21217851-21217899,21218191-21218258,
21218368-21218413,21218548-21218641,21218775-21218837,
21219018-21219171,21219414-21219476,21219568-21219681,
21219779-21219844,21220813-21220870,21221859-21221932,
21222045-21222110,21223139-21223187,21223483-21223550,
21223660-21223705,21223908-21224001,21224117-21224179,
21224290-21224412,21224503-21224536,21224906-21224968,
21225825-21225911,21226293-21226370
Length = 587
Score = 25.8 bits (54), Expect = 9.6
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +1
Query: 148 DPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDNPL 270
+PF + S G S S G + + P+ PP + +PL
Sbjct: 298 NPFADKASKGGSAGQSSYSGGAFYTTQSRPSAPPATHLSPL 338
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,790,200
Number of Sequences: 37544
Number of extensions: 197574
Number of successful extensions: 537
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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