Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_M23
         (576 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces p...    72   5e-14
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    26   4.5  
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      26   4.5  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    26   4.5  
SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar...    25   6.0  
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    25   7.9  
SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr 1|||...    25   7.9  

>SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 227

 Score = 72.1 bits (169), Expect = 5e-14
 Identities = 42/158 (26%), Positives = 76/158 (48%)
 Frame = +1

Query: 100 MALSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXX 279
           M+LSD  VQ ++  M++FI+Q                F +EK ++V++Q   I       
Sbjct: 1   MSLSDEQVQAEMHKMVSFIKQEALEKAKEIHTLSEEEFQVEKAKIVREQCDAIDQTYDMK 60

Query: 280 XXXXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSDLLTTLI 459
                    I  SN+LN++RL++L  ++  + ++     K+L  + +    Y+  +  LI
Sbjct: 61  LKRASMAQKIAKSNVLNKSRLEILNSKQKVIDDIFSRVEKKLDGIEQKKDAYTKFMADLI 120

Query: 460 VQALFQLMEPSVTIRVRQVDKSQVESILARAQQDYKTK 573
           VQA+  L EP   +  RQ D   V++ + +A +  K+K
Sbjct: 121 VQAMELLGEPVGIVYSRQRDAEIVKAAIPKATEVLKSK 158


>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 240 ATAAEDHGILREKRKTGGTPEKNSIIKHAEP 332
           A  + D+G+  +  KTG +P K S +   EP
Sbjct: 3   AHGSNDYGVSLKGNKTGSSPSKASSLNWNEP 33


>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -1

Query: 249 PLLLHEAAFFNVELLLGLSIDFFSLFIGLLFDEGHHMLDLLLNICIAER 103
           P L+H     N E L  L ++FF  F G LFD  H +L +     +++R
Sbjct: 262 PDLVHGFGDKNEESLGILFVEFFRFF-GYLFDYEHFVLSIRHGTFLSKR 309


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 441 SSYNTHCTGSIPVNGAIGDHPRPSSGQVTSRVDPC*SSTGL 563
           SS +T  T ++P+NGA   +P  +S  +    DP   + G+
Sbjct: 62  SSPSTTGTVAVPINGANAVYPSTNSVSLPQSYDPWLDANGV 102


>SPBC215.10 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 364 DHVRNVLDEARKRLAEVPKD 423
           D   N L+EA+KRLA +P D
Sbjct: 181 DDDTNGLEEAKKRLAGIPSD 200


>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +1

Query: 322 MLNQARLKVL-KVREDHVRNVLDEARKRLAEVPKDTK 429
           M +QARL+ L K+R+    +  ++ +K LAE+ +D K
Sbjct: 92  MQDQARLRDLQKIRQQKAEDA-EQRKKILAEIERDKK 127


>SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +2

Query: 98  PWRSAMQMFKSRSSI*WPSSNKRPMKRLKKSMLRPRRS 211
           P  SAM  F    S+ +   N+R +K++K+++L P RS
Sbjct: 72  PRNSAMGNFMV--SVDFQDRNQRSLKQVKRTVLLPHRS 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,024,824
Number of Sequences: 5004
Number of extensions: 35538
Number of successful extensions: 108
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)