Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_M23
         (576 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0134 + 26805329-26805430,26807130-26807230,26807876-268080...    99   1e-21
05_05_0231 + 23488588-23488689,23488775-23488875,23489012-234891...    91   6e-19
01_01_0858 - 6699126-6699128,6699219-6699318,6700052-6700278,670...    83   1e-16
02_03_0179 + 16025962-16026143,16026570-16026684,16026852-160270...    29   2.0  
06_03_0485 + 21330547-21330684,21331391-21331471,21331610-213316...    29   3.5  

>01_06_0134 +
           26805329-26805430,26807130-26807230,26807876-26808032,
           26808386-26808582,26809188-26809287,26809501-26809536
          Length = 230

 Score =   99 bits (238), Expect = 1e-21
 Identities = 55/156 (35%), Positives = 85/156 (54%)
 Frame = +1

Query: 106 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 285
           ++DADV KQI+ M+ FI Q                FNIEK +LV+ ++ KI         
Sbjct: 1   MNDADVAKQIQQMVRFIRQEAEEKASEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60

Query: 286 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSDLLTTLIVQ 465
                  I+ S  LN +R+KVL+ ++D V ++ ++A K+L  V  +   Y +LL  L+VQ
Sbjct: 61  QVEVRKKIEYSMQLNASRIKVLQAQDDLVNSMKEDATKQLLRVSHNHHEYKNLLKELVVQ 120

Query: 466 ALFQLMEPSVTIRVRQVDKSQVESILARAQQDYKTK 573
            L +L EP+V +R R+ D   VES+L  A+ +Y +K
Sbjct: 121 GLLRLKEPAVLLRCRKEDHHHVESVLHSAKNEYASK 156


>05_05_0231 +
           23488588-23488689,23488775-23488875,23489012-23489168,
           23489365-23489594,23489696-23489795,23489878-23489916
          Length = 242

 Score = 91.1 bits (216), Expect = 6e-19
 Identities = 57/167 (34%), Positives = 84/167 (50%), Gaps = 11/167 (6%)
 Frame = +1

Query: 106 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 285
           ++DADV KQI+ M+ FI Q                FNIEK +LV+ ++ +I         
Sbjct: 1   MNDADVGKQIQQMVRFILQEAEEKASEISVAAEEEFNIEKLQLVESEKRRIRQDYERKAK 60

Query: 286 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSDLLTTLIV- 462
                  I+ S  LN AR+KVL+ ++  V  + ++A K L  V KD   Y  +L  LIV 
Sbjct: 61  QVDVGRKIEYSTQLNAARIKVLRAQDGVVGEMKEDAGKSLLRVTKDATAYRKVLKGLIVQ 120

Query: 463 ----------QALFQLMEPSVTIRVRQVDKSQVESILARAQQDYKTK 573
                     Q+L +L EPSV +R R+ D+  VES+L  A+++Y  K
Sbjct: 121 RKDSEIIDQIQSLLRLREPSVVLRCREADRGHVESVLEAAKKEYAEK 167


>01_01_0858 -
           6699126-6699128,6699219-6699318,6700052-6700278,
           6701032-6701188,6701422-6701522,6702147-6702251
          Length = 230

 Score = 83.4 bits (197), Expect = 1e-16
 Identities = 51/166 (30%), Positives = 82/166 (49%), Gaps = 10/166 (6%)
 Frame = +1

Query: 106 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 285
           ++D DV +Q+K M  FI Q                F IEK +LV+ ++ +I         
Sbjct: 2   MNDGDVARQLKQMTDFIRQEAVEKAAEIEAAAAEEFQIEKLQLVEAEKKRIRLEFERNEK 61

Query: 286 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSDLLTTLIVQ 465
                  I+ S  LN +RL+VL+ ++D   ++L+ A K L  + +D  +Y +LL   IVQ
Sbjct: 62  QGDIKKKIEYSKQLNASRLEVLQAQDDLAMSMLEAAGKELLYITRDHHVYKNLLRIFIVQ 121

Query: 466 ----------ALFQLMEPSVTIRVRQVDKSQVESILARAQQDYKTK 573
                     +L +L EP+V +R R+ D+  VES+L  A+ +Y  K
Sbjct: 122 DKLTKKNPEQSLLRLKEPAVILRCRKEDRELVESVLESAKNEYADK 167


>02_03_0179 +
           16025962-16026143,16026570-16026684,16026852-16027065,
           16027346-16027397,16027411-16027696
          Length = 282

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = +2

Query: 104 RSAMQMFKSRSSI*WPSSNKRPMKRLKKSMLRPRRSSTLKKAASCSNS 247
           R A ++ +SRSS   P        R +++ +R R +S+L + A+C N+
Sbjct: 54  RGARRVSRSRSSAAHPRGRLHAACRPRRAGIRVRSTSSLPQVATCKNN 101


>06_03_0485 +
           21330547-21330684,21331391-21331471,21331610-21331683,
           21331767-21331842,21332014-21332081,21332803-21332926,
           21333264-21333362,21333679-21333815,21334166-21334247,
           21334595-21334657,21335272-21335319,21335452-21335514,
           21335840-21335923,21336098-21336118
          Length = 385

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +1

Query: 1   LIGVDLLLRASFWFSGSISADF 66
           L+   LL+RA FWFSG+  AD+
Sbjct: 71  LMKYGLLIRAGFWFSGTSLADW 92


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,360,304
Number of Sequences: 37544
Number of extensions: 243046
Number of successful extensions: 634
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)