Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_M21
(529 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 54 1e-07
SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 3e-07
SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 46 2e-05
SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_47930| Best HMM Match : Vicilin_N (HMM E-Value=1.3) 28 4.1
SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_52654| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_8304| Best HMM Match : PLAT (HMM E-Value=0) 27 9.6
>SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 829
Score = 53.6 bits (123), Expect = 1e-07
Identities = 32/107 (29%), Positives = 51/107 (47%)
Frame = +2
Query: 131 CYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHAN 310
CYY + S R P D++P L CTH+L+ A + T+K+ EN H
Sbjct: 25 CYYTNWSQYRPKGGTFWPEDIDPFL--CTHILFSFAKVNQTTHKLDIYEEN-----DHEL 77
Query: 311 YRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTK 451
Y+ I LK+ P+L+ + VGG E ++ ++ + + R F K
Sbjct: 78 YQRINALKKINPKLKTQIAVGGWTHEEKNSPFSKMVATKEKRAIFIK 124
Score = 49.2 bits (112), Expect = 2e-06
Identities = 30/108 (27%), Positives = 52/108 (48%)
Frame = +2
Query: 128 LCYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHA 307
+CYY + S R P D++P L CTH+++ + + T+ M +N D D
Sbjct: 409 VCYYTNWSQYRPKGGTFWPEDIDPHL--CTHVIHSFSKVNLTTHVMEKYEKN-DFDL--- 462
Query: 308 NYRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTK 451
Y+ I LK+ P+L+ + VGG E ++ ++ + + R F K
Sbjct: 463 -YKRINALKKINPKLKTQIAVGGWTHEEKNSPFSKMVATKEKRAIFIK 509
>SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 807
Score = 52.0 bits (119), Expect = 3e-07
Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 1/107 (0%)
Frame = +2
Query: 128 LCYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHA 307
+CY+ + + R + LP D++P L CTH++Y A I T K+ + N D
Sbjct: 401 VCYFTNWAQYRPDPVKFLPKDIDPLL--CTHIVYAFAKIDPATNKIGTYEWNDD-----R 453
Query: 308 NYRAITNLKRQFPQLRVFLTVGGDDDTEDP-QKYNLLLESPQARTAF 445
Y+ I +LK + P L+ L VGG + P ++ ++ S RT F
Sbjct: 454 LYKEINDLKLKNPSLKTLLAVGGWNHESGPVSPFSQMVASKSNRTTF 500
>SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 270
Score = 46.0 bits (104), Expect = 2e-05
Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 1/107 (0%)
Frame = +2
Query: 128 LCYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGI-QADTYKMVSLNENLDIDRAH 304
+CY+ + S R+ +A+ P D+ PA CTHL+Y A I Q + M N+ D+ +
Sbjct: 22 VCYHTNWSQYRQGRAKFWPEDI-PA-DLCTHLMYSFAKINQKNELAMYEWND----DKLY 75
Query: 305 ANYRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAF 445
+ A LK++ P+L+ L VGG + ++ ++++ R F
Sbjct: 76 PRFNA---LKQKNPELKTLLAVGGWNHENANSPFSRMVKTAATRKVF 119
>SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 438
Score = 38.7 bits (86), Expect = 0.003
Identities = 25/83 (30%), Positives = 42/83 (50%)
Frame = +2
Query: 128 LCYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHA 307
+CYY + + R A+ P +++P+L CTH++Y A + AD K+ N A
Sbjct: 25 VCYYTNWAQYR-GLAKYTPDNIDPSL--CTHIVYAFAKMNADNSKLAMFEWN-----DAA 76
Query: 308 NYRAITNLKRQFPQLRVFLTVGG 376
Y+ + +LK ++ L VGG
Sbjct: 77 MYKKVNDLKSS-SNMKTLLAVGG 98
>SB_47930| Best HMM Match : Vicilin_N (HMM E-Value=1.3)
Length = 769
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +3
Query: 54 PSPGYWR*RLRLPTTQHHLVAKAKSSATMTARAISENLKHVCCLRTW 194
P P R R PT H K + T T R ++ +KHV +RT+
Sbjct: 316 PEPTDKRRRDEPPTDIHERRRYRKVTKTKTIRTVTTTVKHVVTVRTY 362
>SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1670
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +3
Query: 54 PSPGYWR*RLRLPTTQHHLVAKAKSSATMTARAISENLKHVCCLRTW 194
P P R R PT H K + T T R ++ +KHV +RT+
Sbjct: 983 PEPTDKRRRDEPPTDIHERRRYRKVTKTKTIRTVTTTVKHVVTVRTY 1029
>SB_52654| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 27.1 bits (57), Expect = 9.6
Identities = 9/33 (27%), Positives = 21/33 (63%)
Frame = +3
Query: 108 LVAKAKSSATMTARAISENLKHVCCLRTWSLLF 206
LVA+ K++ TAR + + +H+ + W++++
Sbjct: 65 LVARCKNALIQTARTVVKRHRHMIAQQRWTVVY 97
>SB_8304| Best HMM Match : PLAT (HMM E-Value=0)
Length = 1182
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -2
Query: 273 SETILYVSAWMPADLYSRWVQNERAGSKSVGSI 175
+ T++ +AW D Y W+Q + G+ V S+
Sbjct: 398 ASTVIIDTAWCAGDSYDCWLQVDLGGTHCVTSV 430
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,357,452
Number of Sequences: 59808
Number of extensions: 296668
Number of successful extensions: 906
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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