Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_M21
(529 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g39720.1 68415.m04874 zinc finger (C3HC4-type RING finger) fa... 30 1.1
At1g65850.1 68414.m07472 disease resistance protein (TIR-NBS-LRR... 29 1.5
At5g35840.1 68418.m04306 phytochrome C (PHYC) identical to SP|P1... 28 3.4
At5g10650.1 68418.m01233 zinc finger (C3HC4-type RING finger) fa... 28 3.4
At2g18650.1 68415.m02173 zinc finger (C3HC4-type RING finger) fa... 28 3.4
At4g37110.1 68417.m05256 expressed protein 28 4.5
At4g15075.1 68417.m02316 hypothetical protein 28 4.5
At1g13540.1 68414.m01587 expressed protein 28 4.5
At5g56340.1 68418.m07032 zinc finger (C3HC4-type RING finger) fa... 27 5.9
At2g46160.1 68415.m05740 zinc finger (C3HC4-type RING finger) fa... 27 5.9
At5g42870.1 68418.m05225 lipin family protein contains Pfam prof... 23 6.3
At5g44260.1 68418.m05416 zinc finger (CCCH-type) family protein ... 27 7.8
At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1) id... 27 7.8
At3g24210.1 68416.m03038 ankyrin repeat family protein contains ... 27 7.8
>At2g39720.1 68415.m04874 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 401
Score = 29.9 bits (64), Expect = 1.1
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +3
Query: 102 HHLVAKAKSSATMTARAISEN-LKHVCCLRTWSLLFRSAPICCTNLPASKLT 254
H V K +AR + N + H C+ W + S P+C LPA LT
Sbjct: 200 HCAVCKENFVLKSSAREMPCNHIYHPDCILPWLAIRNSCPVCRHELPAEDLT 251
>At1g65850.1 68414.m07472 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1036
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 207 RSAPICCTNLPASKLTHIKWFHSM 278
RS PIC T P+S +H KW H +
Sbjct: 13 RSCPICATPFPSSSSSH-KWTHQV 35
>At5g35840.1 68418.m04306 phytochrome C (PHYC) identical to SP|P14714
Phytochrome C {Arabidopsis thaliana}
Length = 1111
Score = 28.3 bits (60), Expect = 3.4
Identities = 24/89 (26%), Positives = 38/89 (42%)
Frame = -2
Query: 447 VKAVRACGDSNKRLYFCGSSVSSSPPTVKNTRN*GNCLFKFVIAR*LACARSMSKFSLSE 268
V ++R GD+ + ++ SS R G C+ VIAR A + M + L
Sbjct: 987 VSSMRLYGDNLRLQQILSETLLSSIRFTPALR--GLCVSFKVIARIEAIGKRMKRVELEF 1044
Query: 267 TILYVSAWMPADLYSRWVQNERAGSKSVG 181
I++ + +P DL Q R G+ G
Sbjct: 1045 RIIHPAPGLPEDLVREMFQPLRKGTSREG 1073
>At5g10650.1 68418.m01233 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 525
Score = 28.3 bits (60), Expect = 3.4
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 182 PTDLEPALSFCTHLLYKSAG 241
PTD P+LSFC +Y S G
Sbjct: 321 PTDPNPSLSFCPSNIYSSTG 340
>At2g18650.1 68415.m02173 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 finger protein RHX1a
[Arabidopsis thaliana] GI:3790591; contains Pfam profile
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 423
Score = 28.3 bits (60), Expect = 3.4
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 171 HVCCLRTWSLLFRSAPICCTNLPASKLTH 257
HV C+ TW L + P+C +NL + +H
Sbjct: 150 HVECIDTWLLSHSTCPLCRSNLLSGFSSH 178
>At4g37110.1 68417.m05256 expressed protein
Length = 417
Score = 27.9 bits (59), Expect = 4.5
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -3
Query: 266 PFYMCQLGCRQICTADGCRTKEQAPSP*AAY-VLEIL*YSSCCH 138
P ++C + CR IC CRTK+ AAY + L Y S H
Sbjct: 228 PDWICPV-CRDICNCSFCRTKKGWLPTGAAYRKIHKLGYKSVAH 270
>At4g15075.1 68417.m02316 hypothetical protein
Length = 168
Score = 27.9 bits (59), Expect = 4.5
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = +3
Query: 165 LKHVCCLRTWSLLFRSAP 218
L++ CCL+T ++LF+S P
Sbjct: 126 LRNACCLKTATILFKSTP 143
>At1g13540.1 68414.m01587 expressed protein
Length = 381
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 347 QLRVFLTVGGDDDTEDPQKYNLLLESPQARTAF 445
+L V +GGDD T DP + +L+ P + +
Sbjct: 65 KLAVTFNIGGDDSTRDPVVFIPVLDKPLSSNCY 97
>At5g56340.1 68418.m07032 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 396
Score = 27.5 bits (58), Expect = 5.9
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 171 HVCCLRTWSLLFRSAPICCTNLPAS 245
HV C+ W L S P+C LP+S
Sbjct: 282 HVRCIVPWLELHSSCPVCRFELPSS 306
>At2g46160.1 68415.m05740 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 zinc finger protein
ATL6 [Arabidopsis thaliana] GI:4928403; contains Pfam
profile PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 214
Score = 27.5 bits (58), Expect = 5.9
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +3
Query: 171 HVCCLRTWSLLFRSAPIC 224
H+CCL W L S P+C
Sbjct: 162 HLCCLDAWLKLNGSCPVC 179
>At5g42870.1 68418.m05225 lipin family protein contains Pfam
profile: PF04571 lipin, N-terminal conserved region
Length = 930
Score = 23.0 bits (47), Expect(2) = 6.3
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 203 LSFCTHLLYKSAGIQADTYKMVSLNENLDIDR 298
LS C HLL S G+ A+ +E LD+++
Sbjct: 542 LSLCKHLL--SEGMGAEAASQAFNSEKLDMEK 571
Score = 22.6 bits (46), Expect(2) = 6.3
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 98 PASPSSQSKVLCYYDSKSYIRESQARMLPTDLE 196
P+ P SQS C+ SK +RE ++ D E
Sbjct: 486 PSQPLSQSFDPCFNTSKLDLREDESSSGGLDAE 518
>At5g44260.1 68418.m05416 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 381
Score = 27.1 bits (57), Expect = 7.8
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -2
Query: 399 CGSSVSSSPPTVKNTRN*GNCLF 331
CG S SSSP +V + +N CLF
Sbjct: 177 CGGSPSSSPASVLSNKNNRCCLF 199
>At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1)
identical to peroxisome biogenesis protein PEX1
[Arabidopsis thaliana] gi|12006272|gb|AAG44817; contains
Pfam profile PF00004: ATPase, AAA family; identical to
cDNA peroxisome biogenesis protein PEX1 (PEX1) mRNA,
partial cds GI:12006271
Length = 1130
Score = 27.1 bits (57), Expect = 7.8
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = +3
Query: 51 SPSPGYWR*RLRLPTTQHHLV-AKAKSSATMTARAISENLKHVCCLRTWSLLFRSAPICC 227
SP+ G W + ++P+ H L+ S T+ ARA ++ + LL + C
Sbjct: 578 SPAAGMWFSKFKIPSPGHILIYGPPGSGKTILARAAAKYFE-----EQKDLLAHVILVSC 632
Query: 228 TNLPASKLTHI 260
+ L K+ HI
Sbjct: 633 STLALEKVQHI 643
>At3g24210.1 68416.m03038 ankyrin repeat family protein contains
ankyrin repeats, Pfam domain PF00023
Length = 607
Score = 27.1 bits (57), Expect = 7.8
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Frame = +2
Query: 344 PQLRVFLTVGGDDDTEDPQKYNLLLESPQAR------TAFTKFCSSSC*AIWF*RDRSN 502
P ++V +T ++ E ++ L SP + A T F +SS + WF R RSN
Sbjct: 505 PTIKVLVTFTKFEEIEPVDEFKTPLSSPTSSGYESPAAATTDFTNSSSSSSWFRRSRSN 563
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,850,293
Number of Sequences: 28952
Number of extensions: 208202
Number of successful extensions: 625
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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