Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_M20
         (589 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    25   0.55 
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    25   0.55 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    25   0.73 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.0  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 25.0 bits (52), Expect = 0.55
 Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
 Frame = +1

Query: 34  ERRASNSAQRSQHAAALPY*HGLSREN-QTRTQTTKESSRSVQMSTSQTRTYL*TRGQSE 210
           ++R  N  Q  ++   L    G+ RE  Q   Q TKE  +S   STS   + +      E
Sbjct: 155 DKRQRNRCQYCRYQKCLAM--GMKREAVQEERQRTKERDQSEVESTSSLHSDMPIERILE 212

Query: 211 DFKRGECGARTDG 249
             KR EC     G
Sbjct: 213 AEKRVECKMEQQG 225


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 25.0 bits (52), Expect = 0.55
 Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
 Frame = +1

Query: 34  ERRASNSAQRSQHAAALPY*HGLSREN-QTRTQTTKESSRSVQMSTSQTRTYL*TRGQSE 210
           ++R  N  Q  ++   L    G+ RE  Q   Q TKE  +S   STS   + +      E
Sbjct: 155 DKRQRNRCQYCRYQKCLAM--GMKREAVQEERQRTKERDQSEVESTSSLHSDMPIERILE 212

Query: 211 DFKRGECGARTDG 249
             KR EC     G
Sbjct: 213 AEKRVECKMEQQG 225


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.6 bits (51), Expect = 0.73
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 338 IRSAIRCGSRRSRAPTPAPSACERGLSTSPPSVRAP 231
           I + I  G    R+P  +PS  E+  ST+  + R+P
Sbjct: 727 IHNYIMRGEASPRSPNASPSPAEQCASTTTITARSP 762


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = -2

Query: 321 MWQPPFACSNTCSFSL*TWSFNFTT 247
           +WQPP    ++CS  +  + ++  T
Sbjct: 142 VWQPPAVYKSSCSIDVEFFPYDVQT 166


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/40 (22%), Positives = 17/40 (42%)
 Frame = +2

Query: 59   SAASTPPLSPIDMDSQERIKLERKRQRNRVAASKCRRRKL 178
            S +  PP  P     Q        ++ N ++ ++C R +L
Sbjct: 1854 SGSPEPPPPPPRNHDQNNSSFNDSKESNEISEAECDRDQL 1893


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,731
Number of Sequences: 438
Number of extensions: 3314
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)